BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0616.p
         (201 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094644|ref|YP_001099719.1| putative sensor protein [Hermin...   224   2e-60

>gi|134094644|ref|YP_001099719.1| putative sensor protein
           [Herminiimonas arsenicoxydans]
          Length = 203

 Score =  224 bits (572), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 114/203 (56%), Positives = 147/203 (72%), Gaps = 4/203 (1%)

Query: 1   MDPKLAAIIIHDIKNSLGVLEGELRRLSEDVPRAQ--QAHVTCLALQEKLIAFLTLYKAD 58
           M+P+L+AI++HD+KN LGVLEG L  L+ D+ R Q  QAH +C+AL+EK+IAFLTLYKA 
Sbjct: 3   MNPQLSAIVVHDLKNELGVLEGRLATLTVDLDREQALQAHASCIALREKMIAFLTLYKAT 62

Query: 59  SQGLRAQVEAVSPLDFLDALVREQSVSRSSDIALTVDETEMPVIGFFDEHLVALALEAAL 118
            QGL  ++EAV P DFL  L+R    SR  ++ LT+D   +P I FFDEHL+ LA+ AAL
Sbjct: 63  EQGLNPRIEAVHPDDFLRELIRNHVHSRP-ELTLTMDSDALPAIAFFDEHLLGLAMNAAL 121

Query: 119 QNASRFARTQIAVGCRKHPEGGVIFTVRDDGPGIGTQEKKPSTGLGMDLCNAIATAHNKE 178
           QNA+RFA++ I V CRK   G +IFTVRDDGPG+   E++ STGLGM LC AIA AH  +
Sbjct: 122 QNATRFAKSSIVVACRK-TAGEIIFTVRDDGPGLDATEEQASTGLGMALCAAIARAHCSD 180

Query: 179 TQHGEARLSNHPEGGALFELCLP 201
            ++G A LS   +GGALF + LP
Sbjct: 181 DKYGSAHLSTCADGGALFSMRLP 203


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.135    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 347,555
Number of extensions: 12345
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 124
Effective length of database: 746,632
Effective search space: 92582368
Effective search space used: 92582368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)