BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0614.p
         (291 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093701|ref|YP_001098776.1| nitrate ABC transporter permeas...    84   6e-18
gi|134096489|ref|YP_001101564.1| putative transmembranee ABC tra...    78   6e-16

>gi|134093701|ref|YP_001098776.1| nitrate ABC transporter permease
           [Herminiimonas arsenicoxydans]
          Length = 304

 Score = 84.3 bits (207), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 83/154 (53%)

Query: 88  HIVASVTRVAAGFAIGSVLAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLLLLWL 147
           +I+AS+ RVA GF + +++ + LG ++G  +    +  P    L+ +  LAW+P+ LL  
Sbjct: 109 NILASLKRVAVGFGLAALVGIPLGFMIGRFKFLSGMFNPIISLLKPVSPLAWLPIGLLVF 168

Query: 148 GIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHRLIEVGSSSGLDTTELIRHILLPASLPY 207
              +   +  I I + +P+ +N   G++ +    + V     L   +++  IL P+ LPY
Sbjct: 169 KAADPAAIWSIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKIVTKILFPSVLPY 228

Query: 208 LFAGLRGGLSLAWMFLVAAELIAATRGVGYLLSD 241
           +  G+R  +  AW+ +VAAE++    G+G+ + D
Sbjct: 229 MLTGVRLAIGTAWLVIVAAEMLTGGVGIGFWVWD 262


>gi|134096489|ref|YP_001101564.1| putative transmembranee ABC
           transporter protein [Herminiimonas arsenicoxydans]
          Length = 308

 Score = 77.8 bits (190), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 127/281 (45%), Gaps = 18/281 (6%)

Query: 2   RAPVTLNGASTDEAIRSRPLPRRRRGWPHDDGYRPGRFTGWILPLAFLLLVEAGARLELI 61
           RAP      ST+  +  +PL      W         R  G ++ LA  ++ E  AR+ L 
Sbjct: 34  RAP------STEFGVVQKPLTS----WEKLHNNSGARKIGILVLLA--VIWEVYARM-LN 80

Query: 62  PSRLLPPPSELAHTLWSLAARGELLPHIVASVTRVAAGFAIGSVLAVALGLLVGISRRAE 121
            + L P  S +   L      G LL  +  S+  +  G+  G VLA  L +    SR   
Sbjct: 81  NTLLFPTFSSVVEALVEGVISGGLLGKVWFSIKILLMGYGAGLVLAALLTVFAITSRIGR 140

Query: 122 ALLEPSFQALRAIPSLAWIPLLLLWLGIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHRL 181
             LE        +P++A +PL LLW G+     V ++     + V LN  +G + +   L
Sbjct: 141 DFLETLTSMFNPLPAIALLPLSLLWFGLGTGSLVFVLIHSVVWAVALNTHSGFQSVSTTL 200

Query: 182 IEVGSSSGLDTTELIRHILLPASLPYLFAGLRGGLSLAWMFLVAAELI----AATRGVGY 237
             VG + GL     +  IL+PA+ P +  GL+ G + AW  L+AAEL+    + + G+G+
Sbjct: 201 RMVGHNYGLSGLRYVFQILIPAAFPSILTGLKIGWAFAWRTLIAAELVFGVSSGSGGLGW 260

Query: 238 LLSDGRESSRPDLVLAAILILAVLG-KCSDSLLRAVEQKSL 277
            + + +       V A +L + ++G    + + R +EQ ++
Sbjct: 261 FIYENKNQLEIPSVFAGLLTVIMIGLFVENFIFRTIEQCTV 301


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.140    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 462,091
Number of extensions: 16388
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 2
Length of query: 291
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 210
Effective length of database: 733,452
Effective search space: 154024920
Effective search space used: 154024920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)