BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0613.p
         (320 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096015|ref|YP_001101090.1| hypothetical protein HEAR2855 [...   271   3e-74

>gi|134096015|ref|YP_001101090.1| hypothetical protein HEAR2855
           [Herminiimonas arsenicoxydans]
          Length = 315

 Score =  271 bits (694), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 179/323 (55%), Positives = 210/323 (65%), Gaps = 16/323 (4%)

Query: 1   MKKAFVALIVAVMTLSVGMSAVEAKRLGGGGSIGKQSSSASRQAQSPAPMQQNQAAAAKP 60
           MKK  +AL+V   ++++    VEAKR+GGGGS GKQS S  R A    P Q    A    
Sbjct: 1   MKKLLMALVVVASSMTLIAPQVEAKRMGGGGSFGKQSQSFKRAA---PPQQSATPAKPAA 57

Query: 61  AAPAAAPAAAAAKPSMWKGLLGGALLGLGLGALLSHFGLGGALASMISTILTVALIALAI 120
           A  AA  A AAAKPSM + +LGGALLGLGLGALLSH G+GGALASMIST+L V L A A 
Sbjct: 58  APAAAGAAGAAAKPSMMRNILGGALLGLGLGALLSHLGIGGALASMISTMLMVGLFAFAA 117

Query: 121 MFVIRLVRRKSEGAQASQPAPAWASAAPQAADNASGTPQIGSLLKTD-------QSAAAT 173
           MF+ R+++ KS GAQA         + P      S TP+IGS ++         QSAA  
Sbjct: 118 MFIYRMIKAKSAGAQAGNQRNGLQPSFPNNFSEKSSTPEIGSRIEQPYGQPSALQSAAPL 177

Query: 174 TQGG-FGGGFGNAEVAPAYGIPAGFDTVGFVRNAKTYFIRLQAAWDKADINDIREFTTPE 232
             G  FG G     +  A  +PA FD   FVRNAKTYFIRLQAAWDKAD+NDIREFTTPE
Sbjct: 178 ASGSAFGAG-----IDAANDLPADFDVESFVRNAKTYFIRLQAAWDKADVNDIREFTTPE 232

Query: 233 MFAELRLQIQERGTASNQTDVVSLDAEVLGVETVGNDYLASVKFFGFIKEDPSASPAQFA 292
           MFAEL+ Q+ ERG + N TDV+SL+    GVETVG+DY+AS+KF G I E   A    F+
Sbjct: 233 MFAELKAQLLERGASENHTDVISLEGIFYGVETVGDDYIASIKFTGLINEGAGAPTEPFS 292

Query: 293 EIWNLSKPATGQGGWVLAGIQQL 315
           E WNLSKP  G GGWVLAGIQQL
Sbjct: 293 EAWNLSKPVHGDGGWVLAGIQQL 315


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.130    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 378,207
Number of extensions: 12237
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 238
Effective length of database: 730,157
Effective search space: 173777366
Effective search space used: 173777366
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)