BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0611.p (236 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095798|ref|YP_001100873.1| OmpR family response regulator ... 419 e-119 gi|134095857|ref|YP_001100932.1| two-component regulatory system... 244 4e-66 gi|134095287|ref|YP_001100362.1| two-component regulatory system... 154 4e-39 gi|134094768|ref|YP_001099843.1| response regulator in two-compo... 140 6e-35 gi|134093856|ref|YP_001098931.1| two-component system response r... 137 5e-34 >gi|134095798|ref|YP_001100873.1| OmpR family response regulator [Herminiimonas arsenicoxydans] Length = 233 Score = 419 bits (1078), Expect = e-119, Method: Compositional matrix adjust. Identities = 208/230 (90%), Positives = 217/230 (94%) Query: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 MRILLAEDDSVLADGLTRSLR SGY DCVKNGVEADSALSTQDFDLLILDLGLPKMSGL Sbjct: 1 MRILLAEDDSVLADGLTRSLRQSGYVTDCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120 EVL+RLRARNSRLPVLILTA DS+EQRV+GLDLGADD+MAKPFALSELEARVRALTRRGA Sbjct: 61 EVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGA 120 Query: 121 GGGPTVIKHGPLSFDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCE 180 GGGPTVIKHGPLS+DQVGRIAYI +QMLELSARELGLLEVLLQR+GRLVSKEQLVDHLCE Sbjct: 121 GGGPTVIKHGPLSYDQVGRIAYINDQMLELSARELGLLEVLLQRSGRLVSKEQLVDHLCE 180 Query: 181 WGEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGLGYCLEKLPEAGAAPLA 230 W EEVSNNAIEVYVHRLRKKIE+GG+RIATVRGLGYCLEK EA L Sbjct: 181 WSEEVSNNAIEVYVHRLRKKIEIGGLRIATVRGLGYCLEKFAEATPTTLT 230 >gi|134095857|ref|YP_001100932.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 244 bits (622), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 126/220 (57%), Positives = 156/220 (70%) Query: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 MRIL+ EDD+VLA LTR+L +GYA D NG +A+ ALS + L++LD+ LPKM GL Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYAVDYADNGEDANRALSNDAYALVLLDIALPKMDGL 60 Query: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120 VLRRLR R SR+PVLILTA D+++ RV GLDLGADDYM KPF L E EARVRAL RRG Sbjct: 61 AVLRRLRERKSRVPVLILTARDTLDDRVAGLDLGADDYMTKPFDLLEFEARVRALIRRGQ 120 Query: 121 GGGPTVIKHGPLSFDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCE 180 + HG L FD + + +ELS REL + EVLL R G++V+KEQ+VD L Sbjct: 121 FDAGKSLTHGGLRFDLEAHRLFHNDVPVELSVRELAVFEVLLSRQGQVVTKEQMVDRLFG 180 Query: 181 WGEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGLGYCLEK 220 WG++ +NAIEVYVHR+RKK+E + I TVRG+GY LEK Sbjct: 181 WGDDGGSNAIEVYVHRMRKKLEPYNITIRTVRGMGYLLEK 220 >gi|134095287|ref|YP_001100362.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 220 Score = 154 bits (389), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 94/216 (43%), Positives = 131/216 (60%), Gaps = 2/216 (0%) Query: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 MR+LL EDD ++ + L LR YA D V++G A+ A+ + +D+++LDLGLP GL Sbjct: 1 MRVLLIEDDPMIGESLEEGLRKEQYAVDWVRDGHAAELAICSHTYDIVLLDLGLPGKQGL 60 Query: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120 VL R ++ VLI++A D+ RVQGLD GADDY+ KPF L EL AR+RAL RR + Sbjct: 61 AVLTNYRRKHGEAAVLIISARDATAMRVQGLDSGADDYLVKPFDLDELFARMRALLRRRS 120 Query: 121 GGGPTVIKHGPLSFDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCE 180 G + + + L+ + A + SARE LL L+ GR++S+ QL + L Sbjct: 121 GRVSSELIYRELTMNPATHEAAFNGASVHFSAREFALLLALIDPPGRVMSRTQLEERLYG 180 Query: 181 WGEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGLGY 216 W EE+ +N IEVY+H LRKK+ G I VRG+GY Sbjct: 181 WNEEIESNTIEVYIHGLRKKL--GTDFIKNVRGVGY 214 >gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 230 Score = 140 bits (353), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 86/231 (37%), Positives = 130/231 (56%), Gaps = 5/231 (2%) Query: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 M++L+ ED+ + L + L +G+A D NG++ T ++DL+ILD+ LP + G Sbjct: 1 MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGNYDLIILDVMLPDIDGW 60 Query: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120 ++L+ LR + +P L LTA D V RV+GL+LGADDY+ KPFA SEL ARVR L RRG Sbjct: 61 KILQALRNAGNNVPALFLTARDGVADRVKGLELGADDYVVKPFAFSELLARVRTLLRRGI 120 Query: 121 GGGPTV--IKHGPLSFDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHL 178 P V ++ L D R A + L L+ +E LLE L++ G ++ + + + Sbjct: 121 -PSPLVDRMQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQI 179 Query: 179 CEWGEEVSNNAIEVYVHRLRKKI--EVGGVRIATVRGLGYCLEKLPEAGAA 227 + N I+V + RLR K+ + I+T+RG+GY LE +A A Sbjct: 180 WDINFNSDTNVIDVAIRRLRSKMDDDYEPKLISTIRGVGYVLEDPDDARVA 230 >gi|134093856|ref|YP_001098931.1| two-component system response regulator [Herminiimonas arsenicoxydans] Length = 231 Score = 137 bits (345), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 124/223 (55%), Gaps = 4/223 (1%) Query: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 MRIL+ ED+ + D L R L SG+ +NG + + + DL++LD+ LP +SG Sbjct: 1 MRILVIEDEPKIGDYLVRGLAESGFTVCLARNGRDGLFMATHEAVDLIVLDMMLPLLSGW 60 Query: 61 EVLRRLRARNSR--LPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRR 118 E+L LR++ + +PV+ LTA VE RV+GL+LGADDY+ KPFA EL AR+R L RR Sbjct: 61 ELLTALRSQADKQHIPVICLTARGEVEDRVKGLELGADDYLIKPFAFVELLARIRTLLRR 120 Query: 119 GAGGGPTVIKHGPLSFDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHL 178 I+ G + D + R + + L+A+E GLL +L +R ++S+ + + Sbjct: 121 SPVRDEDFIRIGDMEIDVMKRKVMRNGKRITLTAKEFGLLHLLARRQSEVLSRSVIASQV 180 Query: 179 CEWGEEVSNNAIEVYVHRLRKKIE--VGGVRIATVRGLGYCLE 219 + E N I+ V RLR KI+ I T RG+GY E Sbjct: 181 WDINFESDTNVIDAAVRRLRSKIDDPFETKLIHTQRGMGYVCE 223 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.137 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 401,150 Number of extensions: 15748 Number of successful extensions: 131 Number of sequences better than 1.0e-08: 26 Number of HSP's gapped: 115 Number of HSP's successfully gapped: 26 Length of query: 236 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 157 Effective length of database: 740,042 Effective search space: 116186594 Effective search space used: 116186594 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)