BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0610.p (524 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095799|ref|YP_001100874.1| putative two-component sensor k... 627 0.0 gi|134095856|ref|YP_001100931.1| putative transmembrane sensor h... 281 8e-77 gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two... 209 3e-55 gi|134094769|ref|YP_001099844.1| sensor kinase CopS like [Hermin... 109 4e-25 gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two... 105 6e-24 >gi|134095799|ref|YP_001100874.1| putative two-component sensor kinase transcriptional regulatory protein [Herminiimonas arsenicoxydans] Length = 512 Score = 627 bits (1617), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/490 (66%), Positives = 388/490 (79%), Gaps = 3/490 (0%) Query: 33 QPVERIQRSLFGEILDWMLAPLLLLWPMSIAITYLIAQSIANQPFDRALEDSVTVLAQQV 92 Q ER QRSLFGEILDWML PLLLLWP+SIAITYL+A+SIAN+PFDRALED VTV+AQQV Sbjct: 24 QHEERTQRSLFGEILDWMLVPLLLLWPLSIAITYLVAKSIANEPFDRALEDKVTVVAQQV 83 Query: 93 SEVNGKVVARLPVSARDLLRADDIDNIYYRVTGPNGEYVEGDVDMPQPPADDDRATLGTV 152 EVNG+VV RL A D+L ADDIDNIYY++ + +VEGD +MP P ++ A T Sbjct: 84 KEVNGQVVTRLTGPAIDILHADDIDNIYYQIRDAHDTFVEGDPEMPLPKDAEESAPWST- 142 Query: 153 QFRNDILHGSDVRIATLQVDLRRSAAQRAAQHEPRLATVQVGETLEKRAQLANEIIKGVI 212 +FR D +H ++VRIA + VDL ++ + EPR+A VQVGETL+KR+QL N+IIKGVI Sbjct: 143 KFRYDFIHNTEVRIAYIYVDLHKTQVEPQLSIEPRMALVQVGETLDKRSQLVNQIIKGVI 202 Query: 213 LPQFVILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPIDSGQVPEEISPLVRSLN 272 +P+F+ILP+AL LVWFAL+RGL PL+ELQQRIRARRPDDLSPIDSG VPEEI PLV SLN Sbjct: 203 VPEFIILPIALILVWFALTRGLRPLAELQQRIRARRPDDLSPIDSGHVPEEIIPLVGSLN 262 Query: 273 DMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELALRQGDQDDVRRSLEQLAKSSET 332 DML RLSQ+I +QKRFIADAAHQMKTPLAGMRMQSELALRQ D ++ +SLEQLAKSS++ Sbjct: 263 DMLERLSQSIKVQKRFIADAAHQMKTPLAGMRMQSELALRQTDHAEIHKSLEQLAKSSKS 322 Query: 333 ATRLVNQLLSLARAENQQSQSGGMVAVELNELARSVVQDWVPMSFTQRIDLGFEQPDHPI 392 ATR+VNQLL+LARAENQ Q+ M +EL+ELAR VQ+WV SF ++IDLGFEQPD + Sbjct: 323 ATRMVNQLLALARAENQTPQTKPMQVLELSELARDTVQNWVQTSFNRKIDLGFEQPDEAV 382 Query: 393 LITGNPVMLRELLSNLLDNALHYTPHDGNGRVTVRARTDEGGGLAILEVEDNGPGIPVAE 452 + G+ ML ELL+NL+DNAL YTP GN TVR RTD+ GLA LEVEDNGPGI E Sbjct: 383 MARGDATMLHELLNNLIDNALSYTPAGGNA--TVRVRTDQQAGLAFLEVEDNGPGIAPHE 440 Query: 453 RANVFERFYRILGTPSTGSGLGLAIVREIAQQHDAVLEITHNPRCTDARYPGCVFRVSFR 512 R+++FERFYRILG+ GSGLGLAIVREIA QH+A +EI +NPRC + PGC+ RV R Sbjct: 441 RSHIFERFYRILGSNVEGSGLGLAIVREIALQHNAEIEILNNPRCQGQKRPGCLMRVILR 500 Query: 513 MMPRTPFFDD 522 + P +DD Sbjct: 501 LEPAETPWDD 510 >gi|134095856|ref|YP_001100931.1| putative transmembrane sensor histidine kinase transcription regulator protein [Herminiimonas arsenicoxydans] Length = 448 Score = 281 bits (718), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 175/462 (37%), Positives = 258/462 (55%), Gaps = 21/462 (4%) Query: 50 MLAPLLLLWPMSIAITYLIAQSIANQPFDRALEDSVTVLAQQVSEVNGKVVARLPVSARD 109 ML PL L+ + I +Y + + +AN +D L + + V+ G++ L A Sbjct: 1 MLVPLSLILLIDIVGSYFVVRHVANDVYDVELNEIAREMLLHVTHNKGEMGFDLAPEAER 60 Query: 110 LLRADDIDNIYYRVTGPNGEYVEGDVDMPQPPADDDRATLGTVQFRNDILHGSDVRIATL 169 L D D +YY + +G + GD P P + + + +L G VR+A L Sbjct: 61 TLLLDKEDQVYYAIRTMDGNLIAGD---PTLPVQTVIKSGKDTAYYDGVLQGQSVRVALL 117 Query: 170 QVDLRRSAAQRAAQHEPRLATVQVGETLEKRAQLANEIIKGVILPQFVILPVALALVWFA 229 R EP + +QV ET KR + ++ +ILPQ +++ +A L+W Sbjct: 118 -----RGQPLLHPATEPVM--IQVAETQVKRNRHERALLIQLILPQVLLILIAGILIWRG 170 Query: 230 LSRGLSPLSELQQRIRARRPDDLSPIDSGQVPEEISPLVRSLNDMLARLSQTIAIQKRFI 289 ++ GL+PL +LQQ + R DLSPI + VP E+ PLV ++ND++ R+ + Q RFI Sbjct: 171 VAHGLAPLRKLQQEVGMRSHLDLSPIAADNVPGEVEPLVGAVNDLMTRVDAVLGFQGRFI 230 Query: 290 ADAAHQMKTPLAGMRMQSELALRQGDQDDVRRSLEQLAKSSETATRLVNQLLSLARAENQ 349 AD AHQ++TP+AG++ ELALR+ D V+R+L L S+E +RLV+QLLSLAR E Sbjct: 231 ADTAHQLRTPVAGLKAHIELALRENDLTQVKRALGHLYTSAERLSRLVSQLLSLARNE-P 289 Query: 350 QSQSGGMVAVELNELARSVVQDWVPMSFTQRIDLGFEQPDHPILITGNPVMLRELLSNLL 409 + + +LN+LA Q+WVP+++ ++IDLGF+ P+L+ G + E+++NL+ Sbjct: 290 NNVAVNFAPFDLNQLALRAAQEWVPLAYKKQIDLGFDTAGQPVLLNGEAARVTEMINNLV 349 Query: 410 DNALHYTPHDGNGRVTVRARTDEGGGLAILEVEDNGPGIPVAERANVFERFYRILGTPST 469 DNA+ YTP GRVTV R DE A L V D+G IPV ER +FERF+R+LG+ Sbjct: 350 DNAIRYTP--PGGRVTVHVRQDEH---AHLIVSDDGARIPVEERTRIFERFHRLLGSHEE 404 Query: 470 GSGLGLAIVREIAQQHDAVLEITHNPRCTDARYPGCVFRVSF 511 GSGLGLAIV EIA H+A + + D G F VSF Sbjct: 405 GSGLGLAIVHEIATLHNATITLE-----DDVDGVGNTFTVSF 441 >gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two-component regulatory system with QseB, regulates flagella and motility by quorum sensing [Herminiimonas arsenicoxydans] Length = 430 Score = 209 bits (532), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 118/306 (38%), Positives = 176/306 (57%), Gaps = 7/306 (2%) Query: 191 VQVGETLEKRAQLANEIIKGVILPQFVILPVALALVWFALSRGLSPLSELQQRIRARRPD 250 +QV + R ++A + +LP V++PV +W + R L PL L + I R + Sbjct: 87 IQVAQPKAVRNEMAASMALRSLLPFLVMIPVLALFIWIVVGRSLYPLHHLARAIGRRSSN 146 Query: 251 DLSPIDSGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELA 310 L P+ + P E+ P++ +LND+L RL QT+ Q+ F+ADAAH+++TPL +++Q +L Sbjct: 147 ALEPLPGERYPPELQPMLAALNDLLTRLDQTLVTQRAFVADAAHELRTPLTALKLQLQLV 206 Query: 311 LRQGDQDDVRRSLEQLAKSSETATRLVNQLLSLARAENQQSQSGGMVAVELNELARSVVQ 370 R+ D +L + AT LV QLL+LAR E + + ++L +L VV Sbjct: 207 ERENDDRQRATGFRKLHERLNRATHLVQQLLTLARHEYRIADRSSQ-KIDLRQLTARVVS 265 Query: 371 DWVPMSFTQRIDLGF----EQPDHPILITGNPVMLRELLSNLLDNALHYTPHDGNGRVTV 426 D+ P + + +DLG +Q +ITGN LR LL NL+DNA+ YTP +GRV V Sbjct: 266 DYAPQAEHKGVDLGIAINDDQGSDAAMITGNQDSLRILLGNLVDNAVRYTP--SHGRVDV 323 Query: 427 RARTDEGGGLAILEVEDNGPGIPVAERANVFERFYRILGTPSTGSGLGLAIVREIAQQHD 486 T +L V+DNGPGIPV ++ VF+RFYR GT +GSGLGL I + IA QH+ Sbjct: 324 TVNTSTADHTVLLRVKDNGPGIPVQDQERVFDRFYRRDGTGESGSGLGLFIAKTIATQHE 383 Query: 487 AVLEIT 492 A +E++ Sbjct: 384 ATIELS 389 >gi|134094769|ref|YP_001099844.1| sensor kinase CopS like [Herminiimonas arsenicoxydans] Length = 458 Score = 109 bits (272), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 85/310 (27%), Positives = 157/310 (50%), Gaps = 28/310 (9%) Query: 218 ILPVALALV---WFALSRGLSPLSELQQR---IRARRPDDLSPIDSGQVPEEISPLVRSL 271 ++ A+A V W+A +GLSPL + R + ++ ++ P+D+ VP E++ L L Sbjct: 165 VMVAAIATVMLGWWAARQGLSPLRTMAARAQTVTSQNMNERMPVDA--VPTEMTDLAVKL 222 Query: 272 NDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELALRQG-DQDDVRRSLEQLAKSS 330 N ML RL IA F AD AH+++TP++ M Q+ + L Q D R SL A+ Sbjct: 223 NAMLDRLQNDIARLTEFSADLAHELRTPISNMLTQTHVVLNQSRSTADYRDSLSSNAEEL 282 Query: 331 ETATRLVNQLLSLARAENQQSQSGGMVAVELNELARSVVQDWVPMSFTQRIDLGFEQPDH 390 + ++ +L LA+ EN + + + + +++++ + ++ +++ L + + Sbjct: 283 QRLGNTISDMLFLAQTENGLALP-SVAKLNMARECQALLEFYEALAEEKKVVL---RCEG 338 Query: 391 PILITGNPVMLRELLSNLLDNALHYTPHDGNGRVTVRARTDEGGGLAILEVEDNGPGIPV 450 ++ G+ +M R L+NLL NA+ YTP G ++++ + E G + V+++G IP Sbjct: 339 DAVVIGDQLMFRRALNNLLSNAIRYTP--SYGTISIKITSAESG--TTITVQNDGEEIPA 394 Query: 451 AERANVFERFYRI----LGTPSTGSGLGLAIVREIAQQHDAVLEITHNPRCTDARYPGCV 506 + ++F+RF+R + S +GLGL+I R I Q H + + +R Sbjct: 395 EIQPHLFDRFFRADKSRKKSESDSAGLGLSITRAIMQAHGGSVSVV-------SRDSKTA 447 Query: 507 FRVSFRMMPR 516 F + F PR Sbjct: 448 FSLYFPSSPR 457 >gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two-component regulatory system with CusR, regulation of copper resistance, senses copper ions [Herminiimonas arsenicoxydans] Length = 482 Score = 105 bits (262), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 86/286 (30%), Positives = 142/286 (49%), Gaps = 21/286 (7%) Query: 216 FVILPVALALVWFALSRGLSPLSELQQRIRARRPDDL----SPIDSGQVPEEISPLVRSL 271 ++ +AL + WFA+ G P+ ++ + IRA R L SP D VP E++ L S Sbjct: 183 LIVALIALVVAWFAVQWGHRPIRKVSREIRAIRSSQLDVRLSPTD---VPIELAELAVSF 239 Query: 272 NDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELALRQ-GDQDDVRRSLEQLAKSS 330 NDML R+ A F AD AH+++TP+ + Q+++AL Q D+ R L + Sbjct: 240 NDMLGRIEDGFAKLANFSADIAHELRTPVTNLSTQTQVALSQVRSADEYREVLYSNLEEF 299 Query: 331 ETATRLVNQLLSLARAENQQSQSGGMVAVELNELARSVVQDWVPMSFTQRIDLGFEQPDH 390 + + ++ +L LA+ EN ++ + ++ L + + + ++ I L Sbjct: 300 DRLSLMIGDMLFLAQTEN-DPRNLRLTNTDITGLVQGLFDYFEVLAEDANITLTLSGQVK 358 Query: 391 PILITGNPVMLRELLSNLLDNALHYTPHDGNGRVTVRARTDEGGGLAILEVEDNGPGIPV 450 PI I +MLR LSNLL NA+ Y+ +V R + + VE+ G I Sbjct: 359 PI-IADRDMMLRA-LSNLLSNAIRYSLPGS----SVIVRLHQDAKRTTICVENPGEQIAE 412 Query: 451 AERANVFERFYRILGTPS----TGSGLGLAIVREIAQQHDAVLEIT 492 + +F+RF+R+ PS +G+GLGLAIV+ I + HD ++ T Sbjct: 413 DDLPKLFDRFFRV--DPSRQRKSGAGLGLAIVKSIIEAHDGKVQAT 456 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 859,182 Number of extensions: 34188 Number of successful extensions: 216 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 184 Number of HSP's successfully gapped: 20 Length of query: 524 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 438 Effective length of database: 716,977 Effective search space: 314035926 Effective search space used: 314035926 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)