BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0609.p (683 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095801|ref|YP_001100876.1| putative solute:Na+ symporter [... 961 0.0 gi|134093915|ref|YP_001098990.1| putative sodium:solute symporte... 96 8e-21 >gi|134095801|ref|YP_001100876.1| putative solute:Na+ symporter [Herminiimonas arsenicoxydans] Length = 678 Score = 961 bits (2485), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/681 (71%), Positives = 570/681 (83%), Gaps = 4/681 (0%) Query: 3 SNQNFFRRLCRYYGFYTLGFIAFLCVLALLEREGMPRSWIGYLFLFVTIGLYAGIGVVCR 62 + FFRRL RYY +T+ F+ FL +A+LEREG PR+WIGY+F+F TI +YA IGV+ R Sbjct: 2 KTKAFFRRLMRYYVLFTICFVLFLFAVAILEREGFPRAWIGYVFMFCTIVMYATIGVISR 61 Query: 63 TSDVPEYYVAGRRVPPLFNGMATAADWISAATFISLAGGLYLQGFDGLAYILGWTGGYCL 122 TS++ EYYVAGRRVP FNGMATAADWISAA+FISLAGGLYL GFDGLAY++GWTGG+ L Sbjct: 62 TSNMLEYYVAGRRVPAFFNGMATAADWISAASFISLAGGLYLWGFDGLAYLMGWTGGFVL 121 Query: 123 VALLIAPYLRKFGQYTVADFLAARYPGRPGSYGANLIRILAVAATILISFTYVVAQIYGV 182 VALLIAPYLRKFGQYT+ D+LAARY GR Y N++RI+AV ATIL+SFTYVVAQIYGV Sbjct: 122 VALLIAPYLRKFGQYTIPDYLAARYTGR---YSDNVVRIIAVIATILVSFTYVVAQIYGV 178 Query: 183 GLITSRFTGIDFSIGIFLGLASILVCSFLGGMRAITWTQVAQYIIILLAYLIPVIWLSAK 242 GLITSRFTG+DFS+GIFLGLASILVCSFLGGMRA+TWTQVAQYIII++AY+IPV+WLS K Sbjct: 179 GLITSRFTGVDFSVGIFLGLASILVCSFLGGMRAVTWTQVAQYIIIIIAYMIPVVWLSVK 238 Query: 243 HASVPFPPVAYGAVLPKLSALEHKLEDDPKEKEVRRIFQTRADDYAQRLKNLPQSWADGR 302 H ++P PP+AYG+ + KLS E L +DPKEK VR IF RA D ++L+ LP+SW GR Sbjct: 239 HTNIPVPPIAYGSAIAKLSERETVLINDPKEKGVRAIFHQRAQDLDEKLQMLPESWESGR 298 Query: 303 VEAQNQADQIRRDTHASLAEIKAASRALAAYPKSPEEAQRKWSEARAANLARAQPPVSQT 362 E Q+ + ++ +A L EIK R LA YPK PEEA+R+W E RAAN A+PP T Sbjct: 299 AEIQHNLEALKLG-NAPLLEIKQTVRELATYPKDPEEAERRWIEDRAANRELAKPPTRHT 357 Query: 363 DPFPGRDKSSSDIKRNNFLALVFCLMLGTAALPHILMRYYTTPTVAGARSSVFWTLFFIM 422 +PFPG + +SDIKRNNF+ALVFCLMLGTAALPH+L+RYYTT +V R SVFWTLFFIM Sbjct: 358 EPFPGDTEEASDIKRNNFMALVFCLMLGTAALPHVLVRYYTTSSVKETRDSVFWTLFFIM 417 Query: 423 LIYLTVPALAVLVKYDIYTSLVGSSYSHLPDWVYYWANMDKLNPLVSINDLNRDGVVQLG 482 +Y+T+PALAVLVKYDIYTSLVGS +S LP+WV YWAN+DK +PLVSIND+NRDG+VQL Sbjct: 418 ALYITIPALAVLVKYDIYTSLVGSDFSRLPEWVSYWANIDKNHPLVSINDVNRDGIVQLA 477 Query: 483 EVSMDGDIIVLAMPEIAGLPYFVSGLVAAGGLAAALSTADGLLLTISNALSHDIYYKVVD 542 E+ MD DI+VLA PEIAGLPY +SGL+AAGGLAAALSTADGLLLTISNALSHD+YYK VD Sbjct: 478 EIVMDVDIVVLATPEIAGLPYVISGLIAAGGLAAALSTADGLLLTISNALSHDVYYKTVD 537 Query: 543 PSASTQKRVTISKLLLLVVALLAAYAASLKPGDILSMVGAAFSLAASTLFPALVLGVFWK 602 P+A+TQKRVT+SKLLLL+VAL+AAY ASLKPGDILS+VGAAFSLA S LFPAL LGV WK Sbjct: 538 PTATTQKRVTVSKLLLLMVALVAAYIASLKPGDILSLVGAAFSLAGSALFPALALGVIWK 597 Query: 603 RANQPGAVAGIVCGFLMCVYYMLHTNPAFGGSAAGQWFHIAPISAGIFGVPVGMAAMVIV 662 RANQ GA+AG++ GF +C YYM HT+P GGS AGQWFHIAPISAG+FGVP G+ +VIV Sbjct: 598 RANQQGAIAGMLVGFAVCAYYMFHTHPTLGGSVAGQWFHIAPISAGVFGVPAGILTIVIV 657 Query: 663 SLLTPPPDEATVALIDHIRTP 683 SLLTPPPD T AL+ H+R+P Sbjct: 658 SLLTPPPDHRTEALLKHLRSP 678 >gi|134093915|ref|YP_001098990.1| putative sodium:solute symporter; putative pantothenate transporter [Herminiimonas arsenicoxydans] Length = 508 Score = 95.5 bits (236), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 100/191 (52%), Gaps = 12/191 (6%) Query: 62 RTSDVPEYYVAGRRVPPLFNGMATAADWISAATFISLAGGLYLQGFDGLAYILGWTGGYC 121 RT+ E+Y AG + NG A A DW+SAA F+ G L G DG Y + + Sbjct: 26 RTNTASEFYAAGGNLSAKENGFALAGDWMSAAAFLGFTGLTALYGMDGSLYAVSALAAFL 85 Query: 122 LVALLIAPYLRKFGQYTVADFLAARYPGRPGSYGANLIRILAVAATILISFTYVVAQIYG 181 L+ +++A +R G+YT+ D +A R RP + R+ AV T +++ Y++ Q+ G Sbjct: 86 LILMVVAEPIRNTGRYTLGDVIAYRMQ-RPQA------RLAAVVGTAIVNIAYMIPQLAG 138 Query: 182 VGLITSRFTGIDFSIG-IFLGLASILVCSFLGGMRAITWTQVAQYIIILLAYLIPVIWLS 240 G + G+ +S IF+G+ ++ F GGM A TW Q+ + +++L + V WL Sbjct: 139 AGALMKLLLGVPYSTAVIFVGIGMVVYVRF-GGMIATTWVQIIKAVLLLATATVLVTWLL 197 Query: 241 AKHASVPFPPV 251 A+ V F P+ Sbjct: 198 AE---VGFNPL 205 Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 129/287 (44%), Gaps = 40/287 (13%) Query: 382 ALVFCLMLGTAALPHILMRYYTTPTVAGARSSVFWTLFFIMLIYLTVPALAVLVKYDIYT 441 +L L++GTA LPHI+ R++T P AR SV W +F +L T Sbjct: 234 SLSLSLIVGTAGLPHIMTRFFTVPDAKTARKSVIWLMFLAGTFFLA-------------T 280 Query: 442 SLVGSSYSHLPDWVYYWANMDKLNPLVSINDLNRDGVVQLGEVSMDGDIIVLAMPEIAGL 501 +L+G + + + D +I +++ G + L ++ L + Sbjct: 281 TLIGFAAA-------IFVGQD------AIRAVDKGGNLALPLLAQT-----LGGGAGSIG 322 Query: 502 PYFVSGLVAAGGLAAALSTADGLLLTISNALSHDIYYKVV-DPSASTQKRVTISKLLLLV 560 +V A A L+ GL L S ++HD+Y V+ S +V I+KL L Sbjct: 323 GEIFLAVVCAVAFATILAVVAGLTLATSGTVAHDLYVNVIRQGKVSEADQVRIAKLSTLA 382 Query: 561 VALLAAYAASLKPG-DILSMVGAAFSLAASTLFPALVLGVFWKRANQPGAVAGIVCGFLM 619 + ++A L G ++ +V A S+AAS FP +VL +FW+R N G + GI G L+ Sbjct: 383 IGVIATALGLLAEGVNVAVLVILAISIAASANFPVIVLSLFWRRFNTAGVIGGITVG-LV 441 Query: 620 CVYYMLHTNPAFGGSAAGQWFHIAPI-SAGIFGVPVGMAAMVIVSLL 665 + PAF G AA I PI + I +P+G+ V+ + L Sbjct: 442 SAAGLAFIGPAFMGKAA-----IFPIVNPTILSLPLGLLGAVVGTFL 483 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.325 0.139 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,268,647 Number of extensions: 51948 Number of successful extensions: 208 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 205 Number of HSP's successfully gapped: 3 Length of query: 683 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 595 Effective length of database: 710,387 Effective search space: 422680265 Effective search space used: 422680265 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 132 (55.5 bits)