BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0605.p
         (408 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094046|ref|YP_001099121.1| poly[D(-)-3-hydroxybutyrate] de...   364   e-102

>gi|134094046|ref|YP_001099121.1| poly[D(-)-3-hydroxybutyrate]
           depolymerase [Herminiimonas arsenicoxydans]
          Length = 411

 Score =  364 bits (934), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/406 (44%), Positives = 253/406 (62%), Gaps = 6/406 (1%)

Query: 5   YQLYQNYADATDPLRACARLMAPLLGTTWPGVPVNPYLRKMASACEVFARTQLTHVRPPF 64
           YQL++      +PL   A   + L       +   PY +++A+  E+  R    + +P F
Sbjct: 3   YQLHEFNRSLLNPLMHWAEASSRLFTDPASPLAYTPYAQRIAAGYELLYRLGKQYEKPNF 62

Query: 65  GLGEMVDGERTITVHEEEISGTPFCGLLHFRKE------NAVNQPKVLVVAPMSGHFATL 118
            +  ++   +T+ + EEE     FC L+HFRK+       A+ QP VL+VAP+SGH +TL
Sbjct: 63  NIESVLVNGKTVAIVEEETEKKSFCTLIHFRKKLSAKEFAALKQPVVLLVAPLSGHHSTL 122

Query: 119 LRGTVKTLLRDHDVYITDWRNARDIALAHGRFGLDEYVSHVIDFLDVLGPGAHLLAVCQP 178
           LR TV++LL+DHDVYITDW +AR + LA G F L +YV ++ DF+  LGP  H+++VCQP
Sbjct: 123 LRDTVRSLLQDHDVYITDWTDARMVPLAEGPFHLHDYVYYIQDFIRRLGPDLHVISVCQP 182

Query: 179 TVAALTAAAVMAEADHPAQPRTMTLMAGPLDTRVNPTAVNALAKSKPMAWFEKNMISTVP 238
           TV  L A ++MA    P  P+TMT+M GP+D R +PT VN LA  KP AWFE  +I +VP
Sbjct: 183 TVPVLAAISLMASERDPRLPKTMTMMGGPIDARKSPTQVNDLAVEKPHAWFENQVIYSVP 242

Query: 239 ARHAGGGRRVYPGFVQLSAFMNMNLNRHIEAFRKLYHHLVEGEEAQAAQIKDFYEEYFAM 298
             + G GR+VYPGF+Q + F+ MN  RH ++    Y HL EG+   A + + FY+EY A+
Sbjct: 243 PSYPGFGRKVYPGFLQHAGFIAMNPGRHAQSHWDFYMHLREGDNESAEEHRKFYDEYNAV 302

Query: 299 SDLPAEFYLETVRLVFQEHALPLGKLSYGPHLVNPRAIRRTALFTIEGEKDDICAVGQTV 358
            D+PAE+YLET++ VFQEH LPLG       LV P+ I+  ALFTIEGEKDDI   GQT 
Sbjct: 303 LDMPAEYYLETIKTVFQEHRLPLGTWEIEGKLVRPQDIKSVALFTIEGEKDDISGAGQTH 362

Query: 359 AAQEMCSNIRPYMRMHHVQTAVGHYGVFNGRRWENEIYPRLRDFIN 404
           AAQ++CS +    +        GHYG+F+GR+W   I P++ +FI 
Sbjct: 363 AAQDLCSALPQSDKQQFTAPQCGHYGIFSGRKWREIIAPKIGEFIT 408


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 787,628
Number of extensions: 31713
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 324
Effective length of database: 723,567
Effective search space: 234435708
Effective search space used: 234435708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)