BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0604.p
         (218 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096103|ref|YP_001101178.1| glutathione S-transferase [Herm...   174   3e-45

>gi|134096103|ref|YP_001101178.1| glutathione S-transferase
           [Herminiimonas arsenicoxydans]
          Length = 237

 Score =  174 bits (441), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 98/212 (46%), Positives = 127/212 (59%), Gaps = 2/212 (0%)

Query: 6   LRITSKNYSSWSLRGWLMAKFAGLSFEEDIVPPDDPSARAEILLLSSSILVPSLHHGNVL 65
           L I +KNYSSWS+R W+      + F+E  +  D      +I   SS+  VP L  G   
Sbjct: 24  LVIANKNYSSWSMRPWVAMTAFNIPFQEVSLLLDRADTAMQIAHYSSAGRVPILLAGETT 83

Query: 66  VWDTLAIAEYLNEIRPGAKLLPADLAARAHCRSVCGEMHSGFSALRAALPMNLKGHFPNF 125
           +WD+LAI EYL E  P  K+ P D+AARA  RS+C EMHSGF+ +R+A+ MN++  FP  
Sbjct: 84  IWDSLAICEYLAEQFPEKKMWPEDVAARALARSICAEMHSGFTGVRSAMWMNIRARFPGK 143

Query: 126 KVWSRAEADIVRITTIWKECLAKYG-GPFLFGEQRTMADAMYAPVVTRFMTYDVKLDPIC 184
                A+ADI RI+ IW+ CLA  G   FLFGE  ++ADA +APVV RF TYDV L P  
Sbjct: 144 GRTIDAQADIGRISEIWETCLALSGPSEFLFGE-FSIADAYFAPVVMRFRTYDVVLGPAL 202

Query: 185 TAYAKRIMAMPEMQQWIMAAKKEPEDIDELDV 216
            AY +R+ A P + QWI  A  E   I + DV
Sbjct: 203 DAYVERVAAHPAVAQWISGALAETARIPKYDV 234


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.135    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 413,577
Number of extensions: 14510
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 140
Effective length of database: 743,337
Effective search space: 104067180
Effective search space used: 104067180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)