BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0598.p
         (347 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095802|ref|YP_001100877.1| phosphoribosylaminoimidazole sy...   520   e-149

>gi|134095802|ref|YP_001100877.1| phosphoribosylaminoimidazole
           synthetase [Herminiimonas arsenicoxydans]
          Length = 312

 Score =  520 bits (1338), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 260/298 (87%), Positives = 276/298 (92%)

Query: 49  ALFEISKKFKEPVLVSGTDGVGTKLKLAFHLNRHDTVGIDLVAMSVNDILVQGAEPLFFL 108
           A+FEISKK+KEPVLVSGTDGVGTKLKLAF LN+HDTVGIDLVAMSVNDILVQGAEPLFFL
Sbjct: 14  AMFEISKKYKEPVLVSGTDGVGTKLKLAFMLNKHDTVGIDLVAMSVNDILVQGAEPLFFL 73

Query: 109 DYFACGKLDVPSATDVIKGIAAGCEQAGCALIGGETAEMPSMYPDGEYDLAGFAVGAVEK 168
           DYFACGKLDVP ATDVIKG+A GCE AGCALIGGETAEMPSMYPDGEYDLAGFAVGAVEK
Sbjct: 74  DYFACGKLDVPIATDVIKGVAKGCELAGCALIGGETAEMPSMYPDGEYDLAGFAVGAVEK 133

Query: 169 SKIIDGTKIAPGDVVLGLASSGAHSNGYSLVRKILEVAKPDLEADFHGRKLADVLMAPTR 228
           SKIIDGTKI PGDVVLGLASSGAHSNGYSLVRKI+ VA+PDL ADFHGRKLADVL+ PTR
Sbjct: 134 SKIIDGTKIVPGDVVLGLASSGAHSNGYSLVRKIIAVAQPDLNADFHGRKLADVLLEPTR 193

Query: 229 IYVKPLLALMEKLEVKGMVHITGGGLVENIPRVLQDHLTAELDAKSWTMPPLFTWLQQHG 288
           IYVKPLLALM  +EVKGMVHITGGGLVENIPRVLQ HLTA L++ +W MPPLF WLQQHG
Sbjct: 194 IYVKPLLALMASMEVKGMVHITGGGLVENIPRVLQPHLTAVLESSAWDMPPLFKWLQQHG 253

Query: 289 GVADAEMHRVFNCGIGMTVIVSKEDADAAEAHLKAAGETVYRIGTIRARAEGEAQTIV 346
           GV DAEMHRVFNCGIGMTVIV+KE+A AA A L+AAGETV +IG IRAR EG+AQTIV
Sbjct: 254 GVDDAEMHRVFNCGIGMTVIVAKENAAAAMAQLQAAGETVMQIGEIRARQEGQAQTIV 311


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 626,682
Number of extensions: 24900
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 265
Effective length of database: 730,157
Effective search space: 193491605
Effective search space used: 193491605
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)