BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0596.p
         (238 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095803|ref|YP_001100878.1| putative regulator protein [Her...   241   2e-65

>gi|134095803|ref|YP_001100878.1| putative regulator protein
           [Herminiimonas arsenicoxydans]
          Length = 227

 Score =  241 bits (616), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 133/238 (55%), Positives = 160/238 (67%), Gaps = 18/238 (7%)

Query: 1   MKQIPLDLSADQPQSFDSFVTGRNAELLERLKLLA---CAGVDQSIQTGSASTDRFIYLW 57
           M+Q+ LDL A++PQ+  SFV G NAEL+  L+ LA     G+D+          RF+YLW
Sbjct: 1   MRQLLLDLPAEKPQTLTSFVVGANAELIHLLQRLAQGQPGGLDE----------RFVYLW 50

Query: 58  AEAGAGKTHLLHALATRAAQQGTGVRLIGTDSPDAAFEYSPQTSHYLLDDVDQLFEEQQI 117
             AGAGKTHLL ALA+      T + + G    DA F Y P T+ YLLDD  +L  E QI
Sbjct: 51  GGAGAGKTHLLRALAS----ADTTLYIPGDAGADA-FAYQPATTLYLLDDSHKLSPEAQI 105

Query: 118 AAFNLFNQIREQGGCMVCTGTLPPTRLELREDLRTRLGWGLIYQVHDLSDDEKIAALLQI 177
           AAF LFNQ+REQGGC++  G   P  L +REDLRTR GWGLIYQVH LSD+EKIAAL   
Sbjct: 106 AAFALFNQVREQGGCLLAAGNAAPATLTVREDLRTRFGWGLIYQVHGLSDEEKIAALTHA 165

Query: 178 TLDRGLEIPPAVMMYMLTHYRRDMPSLLRMLDALDRYSLATKRAITLPLLRELLQQES 235
              RGL + P V+ Y+L+H+ RDM SL  MLDALD YSL TKR ITLPLLRELLQ+E+
Sbjct: 166 AEARGLMLSPGVLPYLLSHFARDMRSLSAMLDALDEYSLETKRPITLPLLRELLQREN 223


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 391,583
Number of extensions: 13795
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 159
Effective length of database: 740,042
Effective search space: 117666678
Effective search space used: 117666678
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)