BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0594.p
         (521 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095805|ref|YP_001100880.1| poly(A) polymerase I [Herminiim...   705   0.0  
gi|134096102|ref|YP_001101177.1| tRNA nucleotidyl transferase [H...    89   7e-19

>gi|134095805|ref|YP_001100880.1| poly(A) polymerase I
           [Herminiimonas arsenicoxydans]
          Length = 453

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/444 (80%), Positives = 391/444 (88%), Gaps = 15/444 (3%)

Query: 1   MIKKLIRSILG-KGKTTDKSKTKAVGPDGKIEPDVLDPKQHGIDPALVSPNAVRVTQTLQ 59
           MIKK IR ILG K KT D +           +P  L  ++H IDP LVS NA+RVT TLQ
Sbjct: 1   MIKKFIRRILGTKQKTGDHT-----------QPVTLTAQEHRIDPKLVSANAIRVTSTLQ 49

Query: 60  EAGYKAFIVGGAVRDLLLGIKPKDFDVATNATPEQVKQLFRRAFIIGRRFQIVHVMFGQE 119
           EAG+KAF+VGGAVRDLLLG+KPKDFD+ATNATPEQVK+LFRRAFIIG+RFQIVHVMFGQ+
Sbjct: 50  EAGFKAFLVGGAVRDLLLGVKPKDFDIATNATPEQVKKLFRRAFIIGKRFQIVHVMFGQD 109

Query: 120 LIEVTTFRGASAEAAPKDEHGRVLRDNTFGEQHEDATRRDFTINAMYYDPASQAVLDYHG 179
           L+EVTTFRG+S++ APKDEHGRVLRDNTFGEQHEDA RRDFTINAMYYDPA+Q VLDYHG
Sbjct: 110 LLEVTTFRGSSSDGAPKDEHGRVLRDNTFGEQHEDALRRDFTINAMYYDPATQTVLDYHG 169

Query: 180 GIADIRDKKLRIIGEPEARYREDPVRMLRVVRFAAKLKFTIDPASSAPIRVMAPLIDNVP 239
           GIADIR + LRIIG PEARYREDPVR+LRVVRFAAKL F I P +SAPI VMAPLI+NVP
Sbjct: 170 GIADIRTRTLRIIGVPEARYREDPVRLLRVVRFAAKLNFAIAPDTSAPIAVMAPLINNVP 229

Query: 240 AARVFDEMLKLLMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKFVSLALANTDAR 299
            ARVFDEMLKLLMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKFV LALA+TD R
Sbjct: 230 TARVFDEMLKLLMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKFVRLALASTDER 289

Query: 300 VKEGKGVSPGFLFASLLWHQVLEKWRAYQAAGEYPIPALHLAADDVLDAQTEKLALQRKI 359
           VK+GK VSPGFLFASLLWHQVLEKW AYQAAGEYPIPALHLAADDVL+ QT+KLALQRKI
Sbjct: 290 VKQGKPVSPGFLFASLLWHQVLEKWNAYQAAGEYPIPALHLAADDVLNTQTDKLALQRKI 349

Query: 360 ASDMRDIWAMQPRFERRVGKAPYKLLEHLRLRAGFDFLLLRCQSGELDAELGEWWEAFIA 419
           ASDMRDIWAMQPRF+RRVGK PYKLLEHLRLRAG+DFLLLRC SGE+D+E+GEWW AFIA
Sbjct: 350 ASDMRDIWAMQPRFDRRVGKTPYKLLEHLRLRAGYDFLLLRCASGEIDSEIGEWWTAFIA 409

Query: 420 GNGAEREELIARKPTDTASASAGP 443
            +G  REEL+A+KP   A+A+  P
Sbjct: 410 ADGPGREELLAKKP---ATANEAP 430


>gi|134096102|ref|YP_001101177.1| tRNA nucleotidyl transferase
           [Herminiimonas arsenicoxydans]
          Length = 414

 Score = 88.6 bits (218), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 117/230 (50%), Gaps = 16/230 (6%)

Query: 64  KAFIVGGAVRDLLLGIKPKDFD-VATNATPEQVKQLFRRAFIIGRRFQI-VHVMFGQELI 121
           K +IVGGAVRD LLG+  KD D V   ATPEQ+  + +    +G+ F + +H +  +E  
Sbjct: 2   KIYIVGGAVRDELLGVAVKDRDYVVVGATPEQM--IAQNYTPVGKDFPVFLHPVTHEEYA 59

Query: 122 EVTTFRGASAEAAPKDEHGRVLRDNTFGEQHEDATRRDFTINAMYYDPASQAVLDYHGGI 181
              T R    + AP  + G V   +      ED  RRD T+NAM  D A   ++D  GG 
Sbjct: 60  LARTER----KTAPGYK-GFVFHTDAGVTLEEDLIRRDLTVNAMAKD-ADGRIIDPFGGR 113

Query: 182 ADIRDKKLRIIGEPEARYREDPVRMLRVVRFAAKL-KFTIDPASSAPIRVM--APLIDNV 238
            D+  K  R +    + + EDPVR+LRV RFAA+  +F++   ++A ++ M  A  +D +
Sbjct: 114 RDLEQKIFRHVS---SAFAEDPVRILRVARFAARFPQFSVAAETNALMQAMVAAGEVDAL 170

Query: 239 PAARVFDEMLKLLMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKF 288
              R + E+ + LM          LR  G    +LP LD +   P  EK+
Sbjct: 171 VPERTWQELARGLMEVQPSRMFAVLRDCGALQRMLPELDALWGVPQPEKY 220


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 851,686
Number of extensions: 33937
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 2
Length of query: 521
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 435
Effective length of database: 716,977
Effective search space: 311884995
Effective search space used: 311884995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)