BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0592.p (420 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096143|ref|YP_001101218.1| hypothetical protein HEAR2987 [... 205 4e-54 gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [... 171 7e-44 gi|134093880|ref|YP_001098955.1| putative signal peptide [Hermin... 169 2e-43 gi|134094611|ref|YP_001099686.1| hypothetical protein HEAR1387 [... 168 6e-43 gi|134094165|ref|YP_001099240.1| putative sensor/regulator prote... 161 5e-41 >gi|134096143|ref|YP_001101218.1| hypothetical protein HEAR2987 [Herminiimonas arsenicoxydans] Length = 558 Score = 205 bits (521), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 131/388 (33%), Positives = 215/388 (55%), Gaps = 16/388 (4%) Query: 24 QHSVALLQELGVDLIYEAGNGNEALDLLAMLKLPPGLVVIDLEMPGMDGIELIQQLQQKG 83 Q++ L G D I EA A +L+ G+ ID E G+ LI+ + Sbjct: 167 QNTTELKSAFGFD-ITEAVIQQSADRYQGILQDKAGVYRIDPEQLGI----LIESRDAQV 221 Query: 84 IDIPL--IVASSRETSLLLSVETMIQA-LG-MNLIGVLQKP-LNQGQLRAALQAFRPHGA 138 IDI L +V S+++ ++ + + LG + V+Q P L + +AL + Sbjct: 222 IDILLAALVKSAQQPYQFNAIPIHVDSRLGYVTFSKVIQAPELYLQRAESALTSANEKAQ 281 Query: 139 AARAHDDPLPSMCESDLG------AAIGGGQLLPYFQPKVDVQTGILKGVEALARWIHPE 192 A+ + + + +L +A+ GQL ++QPK+ ++TG + GVEAL RW HPE Sbjct: 282 DCVAYSPEISNFAKENLSILGNLMSALEEGQLSMHYQPKISIKTGEIHGVEALMRWNHPE 341 Query: 193 RGMVPPDRFVPLAEQCGLIHDLTISMMDQSMAQAAVWHSRGLAIKVAVNLSPLSLEQPDF 252 RG +PP F+P AEQ LI+ +T ++Q+M Q W + + +AVN+SP +L QP F Sbjct: 342 RGNIPPGIFIPRAEQSTLINLITEFALEQAMKQIVEWRENDIHLAIAVNISPRNLLQPGF 401 Query: 253 MHRILALVDKHALPAENVVLEITESSVVAHKGNSLGMLARLRLKGFGLSIDDYGTGFSSM 312 +L L+ ++ + + + LE+TE +++ +S+ L+RL +SIDD+GTG+SS+ Sbjct: 402 SDLVLQLLQRYDVSGQFLELEVTEGALMTDIAHSISELSRLANAKITISIDDFGTGYSSL 461 Query: 313 QQLARIPFTELKIDRSFVHGAHDRKNLRVILQSALDMAQRLELVTVAEGVETMEDWRLLQ 372 Q L ++P + +KID+SFV D K I+++A+ +A ++ + T+AEGVE + LL Sbjct: 462 QYLHQLPISLIKIDQSFVRRLPDDKGAIHIVEAAVTLAHKMGMRTIAEGVENQRAYTLLA 521 Query: 373 DFGCSLGQGFLIGKPMPANELPLWLKGH 400 D GC + QGF+I +P+PA EL WL + Sbjct: 522 DLGCDIAQGFMISRPLPAAELEKWLAQY 549 >gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [Herminiimonas arsenicoxydans] Length = 715 Score = 171 bits (432), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 93/241 (38%), Positives = 138/241 (57%), Gaps = 1/241 (0%) Query: 154 DLGAAIGGGQLLPYFQPKVDVQTGILKGVEALARWIHPERGMVPPDRFVPLAEQCGLIHD 213 DL A+ + ++QPK + GI+ G EAL RW HP RGM+ PD F+ LAE+ GLI Sbjct: 444 DLRLALERKEFKLHYQPKFNTPNGIVVGAEALLRWQHPTRGMIAPDDFIALAEKTGLIVP 503 Query: 214 LTISMMDQSMAQAAVWHSRG-LAIKVAVNLSPLSLEQPDFMHRILALVDKHALPAENVVL 272 + ++D++ Q +WH G KVAVNLS + + + + ++ PA ++L Sbjct: 504 IGEWVLDEACRQMRIWHDEGNQHWKVAVNLSAVQFSNDHLIELVQTTLARNNFPASGLIL 563 Query: 273 EITESSVVAHKGNSLGMLARLRLKGFGLSIDDYGTGFSSMQQLARIPFTELKIDRSFVHG 332 E+TES+ + SL +L +L G +SIDD+GTG+SS+ L R+P TELKIDR F+ Sbjct: 564 EVTESTAMHDVEASLTILDKLAGLGIDISIDDFGTGYSSLLYLKRLPATELKIDRGFIRD 623 Query: 333 AHDRKNLRVILQSALDMAQRLELVTVAEGVETMEDWRLLQDFGCSLGQGFLIGKPMPANE 392 N I+ + + + + L L VAEGVET E L+ GC QG+L+G+PM ++ Sbjct: 624 LAQGSNDSSIVAAIIALGRSLNLHIVAEGVETEEQQAYLRVLGCDAMQGYLMGRPMAPDQ 683 Query: 393 L 393 Sbjct: 684 F 684 >gi|134093880|ref|YP_001098955.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 944 Score = 169 bits (429), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 97/253 (38%), Positives = 142/253 (56%), Gaps = 1/253 (0%) Query: 151 CESDLGAAIGGGQLLPYFQPKVDVQTGILKGVEALARWIHPERGMVPPDRFVPLAEQCGL 210 E DL A+ + ++QP+VD+++G + GVEAL RW HPE GMVPP RF+ LAE+ GL Sbjct: 684 IEGDLRNALEREEFTLHYQPQVDLRSGQIVGVEALIRWQHPELGMVPPVRFIGLAEENGL 743 Query: 211 IHDLTISMMDQSMAQAAVWHSRGLA-IKVAVNLSPLSLEQPDFMHRILALVDKHALPAEN 269 I + ++ + Q VW G ++++VNLS Q D + I + + L E Sbjct: 744 IVPIGAWVIRTACLQNKVWQESGFGHLRMSVNLSARQFAQEDLVDSIAVSLREANLAPEY 803 Query: 270 VVLEITESSVVAHKGNSLGMLARLRLKGFGLSIDDYGTGFSSMQQLARIPFTELKIDRSF 329 + +E+TES V+A ++G+L L+ G LSIDD+GTG+SS+ L R P LKIDRSF Sbjct: 804 LEIELTESLVMADVDRAIGILRELKALGVQLSIDDFGTGYSSLSYLKRFPIDVLKIDRSF 863 Query: 330 VHGAHDRKNLRVILQSALDMAQRLELVTVAEGVETMEDWRLLQDFGCSLGQGFLIGKPMP 389 V+ + I+ S + +A L L +AEGVET E L++ C QG+ +P+ Sbjct: 864 VNDITIDPDDAAIVASVISLAHSLRLDVIAEGVETEEQLTYLREHNCDQIQGYFFSRPVT 923 Query: 390 ANELPLWLKGHHR 402 A + LK R Sbjct: 924 AEAFSVMLKDGKR 936 >gi|134094611|ref|YP_001099686.1| hypothetical protein HEAR1387 [Herminiimonas arsenicoxydans] Length = 832 Score = 168 bits (425), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 93/251 (37%), Positives = 146/251 (58%), Gaps = 3/251 (1%) Query: 155 LGAAIGGGQLLPYFQPKVDVQTGILKGVEALARWIHPERGMVPPDRFVPLAEQCGLIHDL 214 L A+ +L +QPKV + G ++G E L RW PE GM+ P+ F+P+AE G++ + Sbjct: 578 LRFALERNELSVAYQPKVSLVDGSVRGFELLLRWNSPEYGMISPNEFIPIAETSGMVVPI 637 Query: 215 TISMMDQSMAQAAVWHSRGLA---IKVAVNLSPLSLEQPDFMHRILALVDKHALPAENVV 271 + M+Q+ Q A W + A I VAVN+S L F ++ ++D + + Sbjct: 638 GMWAMEQACRQLAAWQASYPAMGDITVAVNVSMRQLLHTSFFTQVREILDSSGVVPHTIE 697 Query: 272 LEITESSVVAHKGNSLGMLARLRLKGFGLSIDDYGTGFSSMQQLARIPFTELKIDRSFVH 331 LE+TE+S +A+ ++ LA L+ G L++DD+GTG+SS+ L ++P LKID++FVH Sbjct: 698 LELTETSAMANPLQTIENLALLKNLGLRLALDDFGTGYSSLAYLQKLPIDILKIDKTFVH 757 Query: 332 GAHDRKNLRVILQSALDMAQRLELVTVAEGVETMEDWRLLQDFGCSLGQGFLIGKPMPAN 391 G +++ R I++ + +AQ L L TVAEGVET+ LQ+ GC LGQGF+ P+ A Sbjct: 758 GLGTKQSDREIIRLMMALAQTLNLQTVAEGVETIMHINELQEMGCDLGQGFIFSPPLSAE 817 Query: 392 ELPLWLKGHHR 402 E + H+ Sbjct: 818 EAETLICSSHQ 828 >gi|134094165|ref|YP_001099240.1| putative sensor/regulator protein [Herminiimonas arsenicoxydans] Length = 818 Score = 161 bits (408), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 142/247 (57%), Gaps = 1/247 (0%) Query: 152 ESDLGAAIGGGQLLPYFQPKVDVQTGILKGVEALARWIHPERGMVPPDRFVPLAEQCGLI 211 ESDL A+ +L +QP++D++ G + G+EAL RW HP+RG++ P F+P+AE GLI Sbjct: 565 ESDLWHALKNDELFLVYQPQIDLRDGTVIGMEALIRWQHPKRGLIAPMDFIPMAECNGLI 624 Query: 212 HDLTISMMDQSMAQAAVWHSRGLA-IKVAVNLSPLSLEQPDFMHRILALVDKHALPAENV 270 + I +++ + GL I+VA+NLS L +F+ + ++++ L + Sbjct: 625 IPIGIWVLETACRHNLQLQKEGLPPIRVAINLSARQLSDRNFVESVQSVIEAIGLDPHYL 684 Query: 271 VLEITESSVVAHKGNSLGMLARLRLKGFGLSIDDYGTGFSSMQQLARIPFTELKIDRSFV 330 LE+TES V+ + + + L L G LS+DD+GTGFSS+ L R P LKID+SF+ Sbjct: 685 ELEVTESMVMHNVEDVVVTLNDLNKMGIQLSLDDFGTGFSSLAYLKRFPIDRLKIDQSFI 744 Query: 331 HGAHDRKNLRVILQSALDMAQRLELVTVAEGVETMEDWRLLQDFGCSLGQGFLIGKPMPA 390 +I Q+ + +A L++ +AEGVE E L+ GC GQG+ I +P+ Sbjct: 745 FNCDSDPGDAIIAQTIIALAHGLKIKVIAEGVEKSEHLSFLKKNGCDEGQGYFISRPLTF 804 Query: 391 NELPLWL 397 ++L ++L Sbjct: 805 DDLRMFL 811 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 833,289 Number of extensions: 35881 Number of successful extensions: 194 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 188 Number of HSP's successfully gapped: 15 Length of query: 420 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 336 Effective length of database: 723,567 Effective search space: 243118512 Effective search space used: 243118512 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)