BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0590.p
         (299 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094528|ref|YP_001099603.1| glutamate methyltransferase [He...   133   1e-32

>gi|134094528|ref|YP_001099603.1| glutamate methyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 300

 Score =  133 bits (334), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 136/283 (48%), Gaps = 8/283 (2%)

Query: 18  AGATAAAAAVGAHGGDEI--SDHDMLLFQQLFKRHIGLHLPLSKKALLQSRLNHRLHELG 75
           +G+  +++     G  E   +  D    + L  +  G+ L  SK+ ++ SRL  RL   G
Sbjct: 5   SGSMKSSSQTRTEGSKEFEFTARDFERVRALIYKKAGIALAESKQEMVYSRLARRLRATG 64

Query: 76  LRDLTQYFRRIS-GEHDVEERQRAIDLITTNETYFFREQGHFDFLKQELLPQWEQHKSLR 134
           +     Y  R+  G  + EE +   + +TTN T FFRE  HF  L + L    +  + + 
Sbjct: 65  ISSFVTYLDRLEQGSGETEEWEAFTNALTTNLTSFFRESHHFPILAEHLK---KVKEPIE 121

Query: 135 VWSAACATGEEAYTLAMLLDQ--QRAAGSWSVLGSDISLRVLRFARRALYPMARGQNIPR 192
           +W +A +TGEE Y++AM   +          ++ +DI   VL      +Y + R   +  
Sbjct: 122 IWCSAASTGEEPYSIAMTACEAFNTLTPPVRIIATDIDTNVLNTGANGVYSIDRLDKMSP 181

Query: 193 PYLRRYCLLGTGEYEGHFLVQSDLRAKVDFAQRNLTALHEHDDGLYDLIFLRNVIIYFDS 252
              RR+ L G G  EG   V+ +LR  + F Q NL A +    G +D+IF RNV+IYFD 
Sbjct: 182 ERARRFFLRGKGAREGQVRVRPELRQMISFKQVNLLADNWGVSGPFDVIFCRNVMIYFDK 241

Query: 253 DTKLKVLRDVIARLRPGGYLVVGHSESLHGMELELLMHSPSIY 295
            T+ K+L      ++P G L  GHSE+   +  E  +   ++Y
Sbjct: 242 PTQGKILDRFAPLMKPDGLLFAGHSENFLYVCDEFKLRGKTVY 284


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.139    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 541,409
Number of extensions: 21163
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 218
Effective length of database: 733,452
Effective search space: 159892536
Effective search space used: 159892536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)