BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0589.p
         (191 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093366|ref|YP_001098441.1| chemotaxis protein cheW [Hermin...    95   2e-21
gi|134094527|ref|YP_001099602.1| purine-binding chemotaxis prote...    94   3e-21
gi|134096244|ref|YP_001101319.1| purine-binding chemotaxis prote...    93   7e-21
gi|134095757|ref|YP_001100832.1| purine-binding chemotaxis prote...    91   3e-20

>gi|134093366|ref|YP_001098441.1| chemotaxis protein cheW
           [Herminiimonas arsenicoxydans]
          Length = 166

 Score = 95.1 bits (235), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 89/141 (63%), Gaps = 4/141 (2%)

Query: 22  TRQFLTFLVGTESFAMPIASIREIIEFGGLTEVPLMPQFLRGVINLRGSVVPVIDLSVRF 81
           T +FL+F +G E + + I  ++E+  +  +T +   P+F++GV+NLRG +VP+ID+ ++F
Sbjct: 18  TLEFLSFTLGKEEYGISIQKVQELRGYDTVTRIANAPEFIKGVVNLRGIIVPIIDMRIKF 77

Query: 82  GRAPTVPSKRTCVIIMELMQEDQLLLLGVMVDAVSAVLGIGVDQIEPRPSFGAGIRADFI 141
                   + T V+I+ L       ++G++VD+VS V+ +  +QI+P P   + +  D++
Sbjct: 78  KLGTPSYDQFTVVVILHLENH----VVGMVVDSVSDVITLTPEQIKPPPEMNSALATDYL 133

Query: 142 AGMINVNERFIVVLDVPRVLS 162
            G+  V+ER ++++D+ +++S
Sbjct: 134 LGLGTVDERMLILIDIEKLMS 154


>gi|134094527|ref|YP_001099602.1| purine-binding chemotaxis protein
           [Herminiimonas arsenicoxydans]
          Length = 163

 Score = 94.4 bits (233), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 93/152 (61%), Gaps = 4/152 (2%)

Query: 23  RQFLTFLVGTESFAMPIASIREIIEFGGLTEVPLMPQFLRGVINLRGSVVPVIDLSVRFG 82
            +FL F +G E + + I  ++EI  +  +T +   P+F++GV+NLRG +VP++D+ ++F 
Sbjct: 16  NEFLAFTLGREEYGIDILKVQEIRGYETVTRIANAPEFVKGVVNLRGIIVPIVDMRIKFN 75

Query: 83  RAPTVPSKRTCVIIMELMQEDQLLLLGVMVDAVSAVLGIGVDQIEPRPSFGAGIRADFIA 142
                  + T VII+ +       ++G++VD+VS V+ +  +QI+P P  G     D++ 
Sbjct: 76  LGEPTYDQFTVVIILNIGGR----VVGMVVDSVSDVITLSPEQIKPAPEMGTAFNTDYLI 131

Query: 143 GMINVNERFIVVLDVPRVLSVDELASLLGMSA 174
           G+  ++ER ++++D+ +++S +E+  +  ++A
Sbjct: 132 GLGTLDERMLILVDIDKLMSSEEMGLIENIAA 163


>gi|134096244|ref|YP_001101319.1| purine-binding chemotaxis protein
           [Herminiimonas arsenicoxydans]
          Length = 158

 Score = 93.2 bits (230), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 94/154 (61%), Gaps = 4/154 (2%)

Query: 14  RQQEEVIETRQFLTFLVGTESFAMPIASIREIIEFGGLTEVPLMPQFLRGVINLRGSVVP 73
           + +++ +   + L F +G E + + I  ++EI  +  +T++   P+F++GVINLRG +VP
Sbjct: 2   QDKQQSLSGNEVLAFTLGREEYGIDILKVQEIRGYDAVTKIANAPEFIKGVINLRGVIVP 61

Query: 74  VIDLSVRFGRAPTVPSKRTCVIIMELMQEDQLLLLGVMVDAVSAVLGIGVDQIEPRPSFG 133
           ++D+ + F        + T VII+ +       ++G++VD+VS V+ +  +QI+P P  G
Sbjct: 62  IVDMRIMFNLGEPSYDQFTVVIILNIGTR----VVGMVVDSVSDVITLSAEQIKPAPEMG 117

Query: 134 AGIRADFIAGMINVNERFIVVLDVPRVLSVDELA 167
           + +++D++ G+  + ER ++++D+  ++S  E+ 
Sbjct: 118 STMKSDYLLGLGTIEERMLILVDIDLLMSSSEMG 151


>gi|134095757|ref|YP_001100832.1| purine-binding chemotaxis protein
           [Herminiimonas arsenicoxydans]
          Length = 158

 Score = 90.9 bits (224), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 88/144 (61%), Gaps = 4/144 (2%)

Query: 24  QFLTFLVGTESFAMPIASIREIIEFGGLTEVPLMPQFLRGVINLRGSVVPVIDLSVRFGR 83
           + L F +G+E + + I  ++EI  +  +T++   P+F++GVINLRG +VP++D+ + F  
Sbjct: 12  EVLAFTLGSEEYGIDILKVQEIRGYDAVTQIANAPEFIKGVINLRGIIVPIVDMRIMFKL 71

Query: 84  APTVPSKRTCVIIMELMQEDQLLLLGVMVDAVSAVLGIGVDQIEPRPSFGAGIRADFIAG 143
                 + T VII+ +       ++G++VD+VS V+ +  +QI+P P  G  +  D++ G
Sbjct: 72  GVPRYDQFTVVIILNIGNR----VVGMVVDSVSDVITLNNEQIKPAPEMGTAMDTDYLIG 127

Query: 144 MINVNERFIVVLDVPRVLSVDELA 167
           +  + ER ++++D+ +++S  E+ 
Sbjct: 128 LGTIEERMLILVDIDKLMSSSEMG 151


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.140    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 328,800
Number of extensions: 12338
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 4
Length of query: 191
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 114
Effective length of database: 746,632
Effective search space: 85116048
Effective search space used: 85116048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)