BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0588.p (592 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 218 7e-58 gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis pro... 213 2e-56 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 206 2e-54 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 197 1e-51 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 190 1e-49 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 218 bits (555), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 138/367 (37%), Positives = 224/367 (61%), Gaps = 26/367 (7%) Query: 206 PINDFLRQVDERTQARVIQAGTEYTRLEQKIFWLLTASMVVLFVCLGFA--------YRT 257 +++ L ++ ++ + R QA E ++++ A MV+L + F+ R Sbjct: 160 TLDNVLTELSKQKEVRAAQAHVET----EQLYDSSRAFMVLLVILSAFSGILLGVLITRN 215 Query: 258 IRSQIGGEPREAMSVLRRVAEGDLTVTVPLRKRDKISVLYSTQQMVNKWTDVIGDVSGTA 317 ++ Q+GGEP A V R+A GDLTV + LR +D+ S+L++ ++M + ++ V Sbjct: 216 LKGQLGGEPNYAAGVAARIAAGDLTVAIDLRSKDQTSMLFAMREMRDSLASIVSQVRSGT 275 Query: 318 SALASASEQISSSSQALSHNSSQQAANVEETSASVEEITATIAQNADNARTTDGIASLSA 377 + +AS QI++ + LS + +QA+ +EET++S+EEIT+T+ QNA+N++ +A ++ Sbjct: 276 DTITTASGQIAAGNLDLSSRTEEQASALEETASSMEEITSTVKQNAENSQQASTLAVHAS 335 Query: 378 SAATEGGEAVRETVAAM-------KQIASKIGIIDDIAYQTNLLALNAAIEAARAGEHGK 430 S A GG V + V M ++I IG+ID IA+QTN+LALNAA+EAARAGE G+ Sbjct: 336 STAIRGGAVVSQVVDTMGSITESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGR 395 Query: 431 GFAVVAAEVRKLAERAQTAAQEIIAVAENSV-------GLAEKAGGLLNQMVPSIRKTAD 483 GFAVVA+EVR LA+R+ +AA+EI + +SV L E+AG + ++V I++ AD Sbjct: 396 GFAVVASEVRSLAQRSASAAKEIKQLIGDSVEKVDAGSKLVEQAGTTMKEIVGGIQRVAD 455 Query: 484 LVQEIAAASAEQSTGLEQINNAVHQMAQTTQMTAAASEELSATSEEMSAQAIHLQDLMRF 543 ++ +I AA EQS G+EQ+N A+ QM + TQ AA EE +A S+ + QA HL +++ Sbjct: 456 IMSDITAAGREQSAGIEQVNQAIAQMDEVTQQNAALVEEAAAASQSLQDQATHLSEIVSV 515 Query: 544 FRVGEMQ 550 F++ Q Sbjct: 516 FKLDNTQ 522 >gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 538 Score = 213 bits (542), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 146/382 (38%), Positives = 225/382 (58%), Gaps = 32/382 (8%) Query: 192 FDQTYRTLFGRVMAPINDFLR--QVDERTQARVIQAGTEYTRLEQKIFWLLTASMVVL-- 247 Q ++ L V I D LR QVDE AG Y +Q+ + VL Sbjct: 145 LQQQFQKLVPAVRNSI-DALRKLQVDE--------AGLAYEAAQQRYLTIRNVIATVLGA 195 Query: 248 ----FVCLGFAY-RTIRSQIGGEPREAMSVLRRVAEGDLTVTVPLRKRDKISVLYSTQQM 302 LGF R++ +Q+GGEP+ A ++RR+A GDL+ T+ RK D+ S+L + Q M Sbjct: 196 GAVAATLLGFLLVRSVYAQLGGEPQYAAQIVRRIAGGDLSATIITRKGDRNSLLAAMQDM 255 Query: 303 VNKWTDVIGDVSGTASALASASEQISSSSQALSHNSSQQAANVEETSASVEEITATIAQN 362 +GD+ + +A+AS QI++ + LS + QQA+++EET++S+EE+TAT+ QN Sbjct: 256 QQNLAKTVGDIRRASDTIATASGQIAAGNIDLSARTEQQASSLEETASSMEELTATVKQN 315 Query: 363 ADNARTTDGIASLSASAATEGGEAVRETVAAMKQIASK-------IGIIDDIAYQTNLLA 415 A +A+ + +A ++ A +G V + V M I++ IG+I+ IA+QTN+LA Sbjct: 316 AGHAQQANQLAVSASDIAVQGNTVVAQVVTTMDSISASAGRIGDIIGVINGIAFQTNILA 375 Query: 416 LNAAIEAARAGEHGKGFAVVAAEVRKLAERAQTAAQEIIAVAENS---VG----LAEKAG 468 LNAA+EAAR GE G+GFAVVA EVR LA+R+ AA+EI ++ ++S VG L ++AG Sbjct: 376 LNAAVEAARVGEQGRGFAVVATEVRSLAQRSAEAAKEIKSLIDDSLEKVGAGATLVDQAG 435 Query: 469 GLLNQMVPSIRKTADLVQEIAAASAEQSTGLEQINNAVHQMAQTTQMTAAASEELSATSE 528 +N++V SI + D++ EI AS EQ+ G+EQ+N A+ QM + TQ AA EE +A + Sbjct: 436 STMNEIVASIGQVTDIMGEITTASREQTAGIEQVNQAIGQMDRVTQQNAALVEEAAAAAG 495 Query: 529 EMSAQAIHLQDLMRFFRVGEMQ 550 + QA L ++ F++ + Q Sbjct: 496 SLQEQACSLVQVVSVFKLEQAQ 517 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 206 bits (525), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 135/371 (36%), Positives = 225/371 (60%), Gaps = 23/371 (6%) Query: 204 MAPI-NDFLRQVDERTQARVIQAGTEYTRLEQKIF--WLLTASMVVLFVCLG---FAYRT 257 M P+ + DE + ++ A T Y Q +F + + A + VL +G +A+ Sbjct: 153 MPPLFQSLTKSTDELVELQMKSAATGYQD-SQTLFHYFRIIAVVGVLLGLIGVAIYAFFL 211 Query: 258 IRSQIGGEPREAMSVLRRVAEGDLTVTVPLRKRDKI-SVLYSTQQMVNKWTDVIGDVSGT 316 IR+ I G +E + +A GDLT + ++ R+++ +++ Q+M + TD + V Sbjct: 212 IRA-ITGPLKEMLLHFDTIASGDLTSNIEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREG 270 Query: 317 ASALASASEQISSSSQALSHNSSQQAANVEETSASVEEITATIAQNADNARTTDGIASLS 376 + A+++A+ +I++ + LS + QQAA++EET++S+EE+T+T+ QN DNAR + +A+ + Sbjct: 271 SMAISTATTEIAAGNLDLSSRTEQQAASLEETASSMEELTSTVKQNTDNARQANQLATSA 330 Query: 377 ASAATEGGEAVRETVAAM-------KQIASKIGIIDDIAYQTNLLALNAAIEAARAGEHG 429 ++ A +GG V + V M ++I IG+ID IA+QTN+LALNAA+EAARAGE G Sbjct: 331 SAVAVKGGAVVSDVVNTMDAINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQG 390 Query: 430 KGFAVVAAEVRKLAERAQTAAQEIIAVAENSVG-------LAEKAGGLLNQMVPSIRKTA 482 +GFAVVA+EVR LA+R+ AA+EI + ++SV L +AG + ++V S+++ Sbjct: 391 RGFAVVASEVRSLAQRSAAAAKEIKHLIDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVT 450 Query: 483 DLVQEIAAASAEQSTGLEQINNAVHQMAQTTQMTAAASEELSATSEEMSAQAIHLQDLMR 542 D++ EI AAS EQS G+EQ+N A+ QM + TQ AA E+ +A + + QA +L ++ Sbjct: 451 DIMSEILAASQEQSAGIEQVNTAIVQMDEVTQQNAALVEQAAAAASSLRDQATNLSTVVS 510 Query: 543 FFRVGEMQKLP 553 F++ Q P Sbjct: 511 VFKLQGHQSAP 521 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 197 bits (500), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 135/347 (38%), Positives = 207/347 (59%), Gaps = 24/347 (6%) Query: 237 FWLLTASMVVLFVCLGFAYRTIRSQIGGEPREAMSVLRRVAEGDLTVTVPLRKRDKIS-V 295 L+ +V L + + A+ RS I A+SV R VA GDLT + + +D+ + Sbjct: 188 MLLIVLGLVALTLGIVLAWMLTRS-ITKPLDYAVSVARLVASGDLTGRITVDSKDETGQL 246 Query: 296 LYSTQQMVNKWTDVIGDVSGTASALASASEQISSSSQALSHNSSQQAANVEETSASVEEI 355 L + + M + T I V +A+AS QI+S + LS + +QA+++EET++S+EE+ Sbjct: 247 LQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSLEETASSMEEL 306 Query: 356 TATIAQNADNARTTDGIASLSASAATEGGEAVRETVAAM-------KQIASKIGIIDDIA 408 T+T+ QNADNAR + +A ++ A +GG V + V M ++I IG+ID IA Sbjct: 307 TSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIVDIIGVIDGIA 366 Query: 409 YQTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERAQTAAQEIIAVAENSVG------ 462 +QTN+LALNAA+EAARAGE G+GFAVVA+EVR LA+R+ AA+EI + ++SV Sbjct: 367 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDSVDKVDTGS 426 Query: 463 -LAEKAGGLLNQMVPSIRKTADLVQEIAAASAEQSTGLEQINNAVHQMAQTTQMTAAASE 521 L +AG + ++V S+++ D++ EI AAS EQS G+EQ+N A+ QM Q TQ AA E Sbjct: 427 KLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVE 486 Query: 522 ELSATSEEMSAQAIHLQDLMRFFRVGEMQKLPARGRSNNGRAPKQEP 568 E +A +E ++ QA +L + F++ G +N+ R + P Sbjct: 487 EAAAAAESLNEQAANLAQAVSIFKLD--------GVANSSRVATRLP 525 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 190 bits (483), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 130/325 (40%), Positives = 198/325 (60%), Gaps = 17/325 (5%) Query: 239 LLTASMVVLFVCLGFAYRTIRSQIGGEPREAMSVLRRVAEGDLTVTVPL-RKRDKISVLY 297 L+ +++ + + A+R + I EA+ V VAEGDLT + +D+ +L Sbjct: 192 LIIGAVIAILLGTLIAWR-LTVGITRPLHEALKVAESVAEGDLTARSDMAETQDEPGLLL 250 Query: 298 ST-QQMVNKWTDVIGDVSGTASALASASEQISSSSQALSHNSSQQAANVEETSASVEEIT 356 S +M + + +A+AS +I+S + LS + QQA+++EET++S+EE+T Sbjct: 251 SALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQASSLEETASSMEELT 310 Query: 357 ATIAQNADNARTTDGIASLSASAATEGGEAVRETVAAM-------KQIASKIGIIDDIAY 409 +T+ QNADN+R + +A +++ A +GG V + V M K+I IG+ID IA+ Sbjct: 311 STVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKIVDIIGVIDGIAF 370 Query: 410 QTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERAQTAAQEIIAVAENSV-------G 462 QTN+LALNAA+EAARAGE G+GFAVVA EVR LA+R+ AA+EI + +SV Sbjct: 371 QTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIGDSVEKVDAGSK 430 Query: 463 LAEKAGGLLNQMVPSIRKTADLVQEIAAASAEQSTGLEQINNAVHQMAQTTQMTAAASEE 522 L +AG ++++V +++ AD++ EI AAS EQS G+EQ+N AV QM Q TQ AA EE Sbjct: 431 LVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMDQVTQQNAALVEE 490 Query: 523 LSATSEEMSAQAIHLQDLMRFFRVG 547 +A +E + QA +L + + FRVG Sbjct: 491 AAAAAESLQDQARNLAEAVSVFRVG 515 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.127 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 871,247 Number of extensions: 30927 Number of successful extensions: 208 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 150 Number of HSP's successfully gapped: 14 Length of query: 592 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 505 Effective length of database: 713,682 Effective search space: 360409410 Effective search space used: 360409410 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)