BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0587.p (731 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094526|ref|YP_001099601.1| chemotaxis protein cheA [Hermin... 313 2e-86 gi|134094187|ref|YP_001099262.1| putative chemotaxis protein Che... 220 2e-58 gi|134095906|ref|YP_001100981.1| putative composite two componen... 208 1e-54 >gi|134094526|ref|YP_001099601.1| chemotaxis protein cheA [Herminiimonas arsenicoxydans] Length = 697 Score = 313 bits (802), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 169/395 (42%), Positives = 252/395 (63%), Gaps = 17/395 (4%) Query: 331 RAQEQKFIKIEVSKLDQLIDLVGELVIAGASARLIARRRKDSQ----FEEATQAIDTLME 386 ++ E I++ + K+DQLI+LVGELVI A + +R DS E ++ L Sbjct: 300 QSAESSSIRVGIEKVDQLINLVGELVITQA----MIEQRTDSLDPMLHERLLNSVSQLTR 355 Query: 387 QIRD---AALTLRMVQINEVFQRFPRIVRDIARDLDKDIELSMTGSDTELDKSMVERLAD 443 RD A +++RM+ ++ VF RFPR+VRD+A L K IE G+ TELDK ++ER+ D Sbjct: 356 NTRDLQEAVMSIRMMPMDYVFSRFPRMVRDLAGKLGKKIEFVTQGAATELDKGLIERIVD 415 Query: 444 PLMHIVRNAIDHGIEPAAERIAAGKPAKATLRLNAMHESGSVVVEVMDDGRGMDRDRILE 503 PL H+VRN+IDHGIE R AAGK L L+A H+ G++++EV DDG G++R+RIL Sbjct: 416 PLTHLVRNSIDHGIEMPEARTAAGKAPAGQLSLSASHQGGNIIIEVSDDGGGLNRERILA 475 Query: 504 KAVAQGLVAPDAELTDAEIYRCVFEPGFSTAQQVTELSGRGVGMDVVKRNIDALHGEVAI 563 KA +G+ + E+ D ++++ +F PGFSTA+ VT++SGRGVGMDVVKRNI A+ G V I Sbjct: 476 KARQKGMEVSN-EMPDGDVWQLIFAPGFSTAEAVTDVSGRGVGMDVVKRNITAMGGAVEI 534 Query: 564 DTERGRGTVVRLRLPLTLAIISGFQVVVGNAVFVIPLDMVVECIDMPPQ-----HNGTHI 618 + +G GT + + LPLTLAI+ G + VG ++++PL VVE + P+ + Sbjct: 535 RSSKGFGTTISISLPLTLAILDGMSIKVGEEIYILPLGYVVESLQPEPEDVKEISGQGKV 594 Query: 619 VSVRGEPLPFVPLRELFDLPAREQGRARKSLVIVQYGQLRAGLLVDGLLGECQAVIKPLG 678 V VRG+ LP +PL ++FD+ + +VI++ +A L +D L+G+ Q V+K L Sbjct: 595 VKVRGDYLPLIPLYKMFDIEPNFTDPSEGIVVILESEGRKAALFIDELVGQQQVVVKNLE 654 Query: 679 RLFGKVKGLSGSTILGDGRVALILDIPHLVHHTQQ 713 + KV G+SG+TILGDG V+LI+D+ L+ ++Q Sbjct: 655 SNYRKVAGISGATILGDGGVSLIIDVAALLRSSRQ 689 Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 46/82 (56%) Query: 21 MESALLQIEVEGPSRDRINAIFRAAHTIKGSAGLFAFDSIVQFTHQVEHVLDLVREERLA 80 ME LL ++V P + +NAIFRAAH+IKG AG F + + TH +E +LD +R+ +A Sbjct: 1 MEKLLLAVDVSSPDEEDLNAIFRAAHSIKGGAGTFGITDLTEVTHVLETLLDRIRKGEMA 60 Query: 81 LNGPLMSLLLQCGDYIGELVDA 102 L + L D + +D Sbjct: 61 LKPEHVDAFLSAKDILKMQLDG 82 >gi|134094187|ref|YP_001099262.1| putative chemotaxis protein CheA [Herminiimonas arsenicoxydans] Length = 609 Score = 220 bits (561), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 136/397 (34%), Positives = 228/397 (57%), Gaps = 27/397 (6%) Query: 334 EQKFIKIEVSKLDQLIDLVGELVIAGASARLIARRRKDSQFEEATQAIDTLM-------- 385 +++ I+++ KLD L+++ GE V A A ++ K +QF QA TLM Sbjct: 217 KEESIRVDAVKLDALLEVAGESVQAANQASVL--LEKLAQFPVEGQAA-TLMAALAETLN 273 Query: 386 ------EQIRDAALTLRMVQINEVFQRFPRIVRDIARDLDKDIELSMTGSDTELDKSMVE 439 +++ A L+ RM + ++FQ+FPR+VR++A+DL KD++L + G++TE+D+ +V+ Sbjct: 274 RASRYSTELQRATLSTRMQPVGKLFQKFPRLVRELAKDLGKDVDLQIEGAETEVDRVVVD 333 Query: 440 RLADPLMHIVRNAIDHGIEPAAERIAAGKPAKATLRLNAMHESGSVVVEVMDDGRGMDRD 499 L DPL+H++RN++DHGIE A R A GK K+ + L A E+ SV++E+ DDG+GM+ + Sbjct: 334 SLYDPLVHMLRNSLDHGIEDNATRTANGKSTKSVILLKAWQEASSVMIEISDDGKGMNGE 393 Query: 500 RILEKAVAQGLVAPDAELTDAEIYRCVFEPGFSTAQQVTELSGRGVGMDVVKRNIDALHG 559 ++ KA+++GL+A A T E+ + VF PGFST + +SGRGVGMDVVK ++ G Sbjct: 394 QLRAKAISKGLIADTAAQTQEEMLQLVFLPGFSTKEVANSVSGRGVGMDVVKTAVEKHRG 453 Query: 560 EVAIDTERGRGTVVRLRLPLTLAIISGFQVVVGNAVFVIPLDMVVECIDMPPQH---NGT 616 + ID+ G GT +RLP+ L+I+ V +A +P+ +V +++P + G Sbjct: 454 AITIDSTLGVGTRFSIRLPIELSIVPTMLVRSSDAALALPMAVVQRVVELPDEFEHVGGA 513 Query: 617 HIVSVRGEPLPFVPLRELFDLPAREQGRARKSLVIVQYGQLRAGLLVDGLLGECQAVIKP 676 ++ +G PL P+R L E G + +VI L V + G VIKP Sbjct: 514 PVLRDQGRPL---PVRSLAGSLGYELGVEKVGIVISAPQPYI--LSVGAVEGTADLVIKP 568 Query: 677 LGRLFGKVKGLSGSTILGDGRVALILDIPHLVHHTQQ 713 + + V G++G+ +G + L++ + L+ +Q Sbjct: 569 MTAI--TVPGIAGTARSAEGELVLVVGLSFLLEGARQ 603 >gi|134095906|ref|YP_001100981.1| putative composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein [Herminiimonas arsenicoxydans] Length = 1969 Score = 208 bits (529), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 127/366 (34%), Positives = 202/366 (55%), Gaps = 6/366 (1%) Query: 343 SKLDQLIDLVGELVIAGASARLIARRRKDSQFEEATQAIDTLMEQIRDAALTLRMVQINE 402 ++L +L ++ E V S + R DS + T L ++ + +RMVQ Sbjct: 1428 TRLQELTRMMAESVNDVGSVQQNLSRTIDSASTDLTNQA-RLTRDLQQDLMRVRMVQFAS 1486 Query: 403 VFQRFPRIVRDIARDLDKDIELSMTGSDTELDKSMVERLADPLMHIVRNAIDHGIEPAAE 462 + +R R+ R A+++DK + L + GS E+D+S++E++A P H++RNAI HGIE + Sbjct: 1487 ISERLYRVTRQAAKEMDKRVNLDIRGSAVEVDRSVLEKMAGPFEHLLRNAIVHGIESREK 1546 Query: 463 RIAAGKPAKATLRLNAMHESGSVVVEVMDDGRGMDRDRILEKAVAQGLVAPDAELTDAEI 522 R AAGK LR+ E VV+ DDG+G++ + I KA+ GLV + L+DAE+ Sbjct: 1547 RRAAGKSETGELRIEIRQEGNEVVIHFSDDGQGLNLNSIRSKALQNGLVKAEDALSDAEV 1606 Query: 523 YRCVFEPGFSTAQQVTELSGRGVGMDVVKRNIDALHGEVAIDTERGRGTVVRLRLPLTLA 582 +F PGFSTA+++TEL+GRG+GMDVV+ +L G VAI +E G+G + LPLTLA Sbjct: 1607 TDLIFHPGFSTAEEITELAGRGIGMDVVRSEAASLGGRVAIASEPGKGAYFTIHLPLTLA 1666 Query: 583 IISGFQVVVGNAVFVIPLDMV--VECIDMPPQHNGTH--IVSVRGEPLPFVPLRELF-DL 637 + + G + IP +V V+ + P + V + + +P L L D Sbjct: 1667 VTQVVILSTGGKTYAIPSVLVEQVQQLKNGPLATAYNEGAVMWQSQRVPMHYLSALLGDT 1726 Query: 638 PAREQGRARKSLVIVQYGQLRAGLLVDGLLGECQAVIKPLGRLFGKVKGLSGSTILGDGR 697 A + L+I++ G R L VD +LG + V+K +G ++ G++G+T+LG G Sbjct: 1727 DAAPVTQQYSPLMILKSGSDRVALHVDEILGNREVVVKNIGPQLSRMIGIAGATVLGSGE 1786 Query: 698 VALILD 703 + LIL+ Sbjct: 1787 IVLILN 1792 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,251,065 Number of extensions: 50584 Number of successful extensions: 208 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 203 Number of HSP's successfully gapped: 5 Length of query: 731 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 642 Effective length of database: 707,092 Effective search space: 453953064 Effective search space used: 453953064 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)