BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0585.p (122 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094525|ref|YP_001099600.1| chemotactic response regulator ... 123 3e-30 gi|134094532|ref|YP_001099607.1| chemotactic response regulator ... 87 2e-19 gi|134095910|ref|YP_001100985.1| twitching motility protein [Her... 73 4e-15 gi|134095909|ref|YP_001100984.1| twitching motility protein. pil... 68 1e-13 gi|134095906|ref|YP_001100981.1| putative composite two componen... 67 2e-13 >gi|134094525|ref|YP_001099600.1| chemotactic response regulator [Herminiimonas arsenicoxydans] Length = 121 Score = 123 bits (308), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 56/120 (46%), Positives = 82/120 (68%) Query: 1 MEKSILIVDDSFSLRQTISAALKSAGYHVEEATDGRQALSKLDGRKFNLVISDLNMPHLD 60 M K+IL VDDS SLRQ + +L++AGY V EA DG+ L K + F+LV++D NMP +D Sbjct: 1 MTKTILAVDDSGSLRQMVVFSLRAAGYQVTEAVDGQDGLDKAQMQVFDLVLTDQNMPRMD 60 Query: 61 GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLV 120 G S +R ++ +P Y+ P+++LTTESS+ K +G+AAG W+ KPF P L + V K++ Sbjct: 61 GFSLIRALRALPTYQKVPILVLTTESSDEMKAKGRAAGANGWLVKPFDPQRLTEVVKKVI 120 >gi|134094532|ref|YP_001099607.1| chemotactic response regulator [Herminiimonas arsenicoxydans] Length = 132 Score = 87.4 bits (215), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 71/118 (60%), Gaps = 1/118 (0%) Query: 5 ILIVDDSFSLRQTISAALKSAGY-HVEEATDGRQALSKLDGRKFNLVISDLNMPHLDGLS 63 L+VDD ++R+ + LK GY +V+EA DG ALSKL F+ V+SD NMP++DGL+ Sbjct: 8 FLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVMALSKLRSETFDFVVSDWNMPNMDGLT 67 Query: 64 FVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLVQ 121 +++++ PA PV+M+T E+ + AG +V KPF L + +AK+ + Sbjct: 68 MLQQIRADPALSKLPVLMVTAEAKKENIIAAAQAGANGYVVKPFTAATLDEKLAKIFE 125 >gi|134095910|ref|YP_001100985.1| twitching motility protein [Herminiimonas arsenicoxydans] Length = 133 Score = 73.2 bits (178), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 61/112 (54%) Query: 5 ILIVDDSFSLRQTISAALKSAGYHVEEATDGRQALSKLDGRKFNLVISDLNMPHLDGLSF 64 I+++DDS ++R++ L AGY V A DG AL+K++ K L+ D+ MP LDG Sbjct: 12 IMVIDDSSTIRRSAEIFLGQAGYKVVLADDGFDALAKMNDHKPALIFCDILMPRLDGYQT 71 Query: 65 VREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAV 116 +K+ + TPVIML+++ + G G A++ KPF LL V Sbjct: 72 CALIKKSAKFHSTPVIMLSSKDGLFDRARGAMVGSDAYLTKPFTKDSLLKTV 123 >gi|134095909|ref|YP_001100984.1| twitching motility protein. pilH ortholog [Herminiimonas arsenicoxydans] Length = 121 Score = 68.2 bits (165), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 61/117 (52%) Query: 3 KSILIVDDSFSLRQTISAALKSAGYHVEEATDGRQALSKLDGRKFNLVISDLNMPHLDGL 62 + ILIVDDS + R ++ L G+ V A +G +AL K+ K L++ D+ MP +G Sbjct: 4 QKILIVDDSPTERYFLTDILVKKGFSVSTAENGEEALLKIKADKPQLILMDIVMPGQNGF 63 Query: 63 SFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKL 119 R + + P + P+I+ T++ E + G G R ++ KP P LL +A L Sbjct: 64 QITRAITRDPETQDVPIIICTSKGQETDRIWGLRQGARDYIVKPVDPAELLSKIAAL 120 >gi|134095906|ref|YP_001100981.1| putative composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein [Herminiimonas arsenicoxydans] Length = 1969 Score = 67.4 bits (163), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 60/117 (51%) Query: 5 ILIVDDSFSLRQTISAALKSAGYHVEEATDGRQALSKLDGRKFNLVISDLNMPHLDGLSF 64 +++VDDS ++R+ L GY V A DG AL L ++++ D+ MP +DG Sbjct: 1847 VMVVDDSLTVRRVTQRLLTREGYQVVLAKDGVDALQHLQSVTPDVMLVDIEMPRMDGFDL 1906 Query: 65 VREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLVQ 121 R ++ + P+IM+T+ ++ + G+ ++ KP+Q L+ +A ++ Sbjct: 1907 TRNIRDDERTRDIPIIMITSRTASKHRNYAMELGVNEYLGKPYQEEALVKLIAGFIK 1963 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.132 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 209,423 Number of extensions: 7062 Number of successful extensions: 80 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 86 Number of HSP's successfully gapped: 15 Length of query: 122 Length of database: 1,000,347 Length adjustment: 71 Effective length of query: 51 Effective length of database: 766,402 Effective search space: 39086502 Effective search space used: 39086502 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)