BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0581.p
         (275 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095809|ref|YP_001100884.1| 3-methyl-2-oxobutanoate hydroxy...   405   e-114

>gi|134095809|ref|YP_001100884.1| 3-methyl-2-oxobutanoate
           hydroxymethyltransferase [Herminiimonas arsenicoxydans]
          Length = 276

 Score =  405 bits (1040), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 191/276 (69%), Positives = 231/276 (83%), Gaps = 1/276 (0%)

Query: 1   MAGYLQES-GAVRAKPVTTHTLQALRAKGEKITMLTCYDASFATLMERAGLETVLIGDSL 59
           M  YLQE+  A R K VT   L ALRAKGEKITMLT YDASFA+LM+  G+ET+L+GDSL
Sbjct: 1   MTSYLQENETAGRNKAVTVPALFALRAKGEKITMLTAYDASFASLMDMCGVETLLVGDSL 60

Query: 60  GMVSQGHDSTLPVTIQDMAYHTAAVARGTRTMLIIADLPFGTYPSREDAFRNAALLMQAG 119
           GMV QGH STLPVTI+D+AYHTA VARG +T L++AD+PFG+Y + E AF+NA  L+QAG
Sbjct: 61  GMVCQGHSSTLPVTIEDIAYHTACVARGNKTALLLADMPFGSYATPESAFQNAVKLIQAG 120

Query: 120 AQMIKLEGGVWLADTIKFLTERGIPVCAHIGLTPQSVHQLGGFKVQGKTSDGATQLHADA 179
           AQM+K+EGG W+ DT++FL ER IPVCAH+GLTPQSVH+ GG+KVQGKT++ A QL  DA
Sbjct: 121 AQMVKIEGGAWVLDTVRFLVEREIPVCAHLGLTPQSVHRFGGYKVQGKTAEAAQQLKDDA 180

Query: 180 LAVQQAGASLVVIEAVPAALGKEVTDRLAVPTIGIGAGPDCSGQVLVMHDMLGVFPGHKS 239
           LA+Q AGASL+++EA+PA+LGKEVTD L +PTIGIGAGPDCSGQVLVMHD +GVFPG K+
Sbjct: 181 LALQAAGASLLILEAIPASLGKEVTDILTMPTIGIGAGPDCSGQVLVMHDFIGVFPGKKA 240

Query: 240 RFVRNFMEGASGIEDAVRRYVAAVKDGSFPAQEHCF 275
           RFV+NFMEG + IE AVR Y+  VK+G+FPA EHCF
Sbjct: 241 RFVKNFMEGQTSIEGAVRAYIREVKEGTFPAPEHCF 276


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 535,472
Number of extensions: 21904
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 195
Effective length of database: 736,747
Effective search space: 143665665
Effective search space used: 143665665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)