BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0580.p (376 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095814|ref|YP_001100889.1| chaperone protein DnaJ [Hermini... 645 0.0 gi|134094663|ref|YP_001099738.1| Hsp40 family curved DNA-binding... 158 5e-40 gi|134094901|ref|YP_001099976.1| curved DNA-binding protein [Her... 147 6e-37 >gi|134095814|ref|YP_001100889.1| chaperone protein DnaJ [Herminiimonas arsenicoxydans] Length = 374 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/376 (85%), Positives = 341/376 (90%), Gaps = 2/376 (0%) Query: 1 MAKRDFYEVLGLAKNASDDEIKKAYRKLAMKYHPDRNPDSKGAEDKFKEVKEAYEMLSDP 60 MAKRDFYE+LGL KNASD+EIKKAYRKLAMK+HPDRNPDSKGAEDKFKE KEAYEMLSDP Sbjct: 1 MAKRDFYEILGLGKNASDEEIKKAYRKLAMKHHPDRNPDSKGAEDKFKEAKEAYEMLSDP 60 Query: 61 QKREAYDRYGHAGVDPNMGAGGAAGAGGFADAFGDIFGDIFGGGGGGRGRNAGPQVYRGA 120 QKR+AYDRYGHAGVDPNMG GG G A DIFGDIFG GGGRG GPQVYRGA Sbjct: 61 QKRDAYDRYGHAGVDPNMGGGGGGGGFADAFG--DIFGDIFGQAGGGRGGRGGPQVYRGA 118 Query: 121 DLRYNLEITLEQAAHGFDTTIRVPSWDQCDTCHGSGAKPGTSPVTCTTCGGHGQVRMQQG 180 DLRYNLEITLEQAAHG+DTTIRVPSWD C+TC GSGAKPGTSP+ CTTCGGHGQVRMQQG Sbjct: 119 DLRYNLEITLEQAAHGYDTTIRVPSWDSCETCDGSGAKPGTSPINCTTCGGHGQVRMQQG 178 Query: 181 FFSIQQTCPKCHGSGKIIPEPCTTCAGAGRIKRNKTLEVKIPEGIDDGMRIRSSGNGEPG 240 FFS+ QTCPKCHGSGKI P PCT C+GAG+IKRNKTLEVKIP GIDDGMRIRSSGNGEPG Sbjct: 179 FFSVLQTCPKCHGSGKINPSPCTACSGAGKIKRNKTLEVKIPSGIDDGMRIRSSGNGEPG 238 Query: 241 VNGGPPGDLYVEIHIKPHDVFQRDGDDLHCEMPISFAKAALGGEIEAPTLNGKASFSIPE 300 +NGGPPGDLYVEI IK H +FQR+GDDLHCE+PISFAKAALGGEIE PTLNGKASF+IPE Sbjct: 239 MNGGPPGDLYVEIRIKQHAMFQREGDDLHCEIPISFAKAALGGEIEVPTLNGKASFTIPE 298 Query: 301 GTQSGKTFRLRGKGIKGVRSGYPGDLFCHVVVETPVKLTERQKELLREFEQLTTEGGAKH 360 GTQSGKTFRLR KGIKGVRSGY GDLFCHVVVETPV LTE+QKELLREFE LT EGG+KH Sbjct: 299 GTQSGKTFRLRSKGIKGVRSGYAGDLFCHVVVETPVTLTEKQKELLREFELLTIEGGSKH 358 Query: 361 SPQTKTWKDKVKEFFE 376 SPQTK+WKDKVKEFFE Sbjct: 359 SPQTKSWKDKVKEFFE 374 >gi|134094663|ref|YP_001099738.1| Hsp40 family curved DNA-binding protein, co-chaperone [Herminiimonas arsenicoxydans] Length = 313 Score = 158 bits (399), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 180/367 (49%), Gaps = 79/367 (21%) Query: 1 MAKRDFYEVLGLAKNASDDEIKKAYRKLAMKYHPDRNPDSKGAEDKFKEVKEAYEMLSDP 60 M +D+YE+LG+ ++A+ DEIK AYRKLA KYHPD + ++ AE +FKE+ EAY++L DP Sbjct: 1 MKFKDYYEILGVKRDATQDEIKSAYRKLARKYHPDVSKEA-NAEARFKEMGEAYKVLKDP 59 Query: 61 QKREAYDRYG---HAGVD----PNMGAG----GAAGAGGFADA--FGDIFGDIFGGG-GG 106 ++R +YD+ G G D PN AG G GF D F D F +FG G Sbjct: 60 EQRASYDQLGANWKNGQDFQPPPNADAGFEFSGRGAHAGFGDGSDFSDYFEQLFGQQRGW 119 Query: 107 GRGRNAGPQVYRGADLRYNLEITLEQAAHGFDTTI--RVPSWDQCDTCHGSGAKPGTSPV 164 GRG+ + +G D ++I LE A G +I R+P+ D+ Sbjct: 120 GRGQQRA-RHEQGEDHHAKVQIDLEDAYRGAKRSISLRMPTVDE---------------- 162 Query: 165 TCTTCGGHGQVRMQQGFFSIQQTCPKCHGSGKIIPEPCTTCAGAGRIKRNKTLEVKIPEG 224 HG V + + +TL V IP+G Sbjct: 163 -------HGHV-----------------------------------VTKERTLSVNIPKG 180 Query: 225 IDDGMRIRSSGNGEPGVNGGPPGDLYVEIHIKPHDVFQRDGDDLHCEMPISFAKAALGGE 284 I G +R +G G PG+ G GDLY+EI +PH ++ DG D++ ++P++ +AALG Sbjct: 181 IRAGQTLRLAGQGGPGIGEGKAGDLYLEIVFRPHPRYRVDGRDVYVDLPLAPWEAALGAS 240 Query: 285 IEAPTLNGKASFSIPEGTQSGKTFRLRGKGIKGVRSGYPGDLFCHVVVETPVKLTERQKE 344 I PT G +IP + +G+ RL+GKGI G + GDL+ + + P TE ++ Sbjct: 241 IAVPTPEGSVELTIPPNSSAGRKLRLKGKGIPGKEA---GDLYVVLNIALPPADTESARQ 297 Query: 345 LLREFEQ 351 R +Q Sbjct: 298 AYRTLQQ 304 >gi|134094901|ref|YP_001099976.1| curved DNA-binding protein [Herminiimonas arsenicoxydans] Length = 314 Score = 147 bits (372), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 111/355 (31%), Positives = 168/355 (47%), Gaps = 79/355 (22%) Query: 1 MAKRDFYEVLGLAKNASDDEIKKAYRKLAMKYHPDRNPDSKGAEDKFKEVKEAYEMLSDP 60 M +++Y+ LG+ ++A+ + IK AYRKLA KYHPD + + AE +FKEV EAY++L DP Sbjct: 1 MKSKNYYQTLGVPRDATQEVIKNAYRKLARKYHPDVSRELH-AELRFKEVGEAYKVLKDP 59 Query: 61 QKREAYDR---YGHA-------------GVDPNMGA-GGAAGAGGFADAFGDIFGDIFGG 103 +KR YD+ + H G D A G A D F DI ++ G Sbjct: 60 EKRLEYDQMSGFFHTRKESPQPQASRSYGFDSQKEARTGTRSAKRSDDNFSDILDEMMGR 119 Query: 104 GGGGRGRNAGPQVYRGADLRYNLEITLEQAAHGFDTTIRVPSWDQCDTCHGSGAKPGTSP 163 N P +R ++ HG D +V D DT HG+ Sbjct: 120 P------NPAPPRHRSINV------------HGSDQHAKV-QIDLEDTFHGTA------- 153 Query: 164 VTCTTCGGHGQVRMQQGFFSIQQTCPKCHGSGKIIPEPCTTCAGAGRIKRNKTLEVKIPE 223 C+ S +P T G + + +TL+V +P+ Sbjct: 154 ---------------------------CNIS---MPTYVTDEYGMPMVSK-RTLKVSVPK 182 Query: 224 GIDDGMRIRSSGNGEPGVNGGPPGDLYVEIHIKPHDVFQRDGDDLHCEMPISFAKAALGG 283 GI G +R +G G PG+ G GDLY+E+ I+PH ++ +G D++ ++P++ A+AA+G Sbjct: 183 GIRGGQTLRLAGQGFPGMGEGKAGDLYLEVMIRPHRRYRVEGRDIYFDIPLTSAQAAVGT 242 Query: 284 EIEAPTLNGKASFSIPEGTQSGKTFRLRGKGIKGVRSGYPGDLFCHVVVETPVKL 338 + PT G SIP G+ G+ RL+GKGI G + GDL+ V+V P + Sbjct: 243 TVNVPTPEGSVQLSIPAGSMPGRRLRLKGKGIPGDPA---GDLYA-VIVNVPTSV 293 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.138 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 673,097 Number of extensions: 26331 Number of successful extensions: 101 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 89 Number of HSP's successfully gapped: 5 Length of query: 376 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 293 Effective length of database: 726,862 Effective search space: 212970566 Effective search space used: 212970566 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)