BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0578.p (646 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095815|ref|YP_001100890.1| molecular chaperone DnaK [Hermi... 1125 0.0 gi|134095416|ref|YP_001100491.1| chaperone protein HscA [Hermini... 419 e-118 gi|134094326|ref|YP_001099401.1| putative heat-shock protein Hsp... 65 8e-12 >gi|134095815|ref|YP_001100890.1| molecular chaperone DnaK [Herminiimonas arsenicoxydans] Length = 649 Score = 1125 bits (2909), Expect = 0.0, Method: Compositional matrix adjust. Identities = 573/647 (88%), Positives = 602/647 (93%), Gaps = 1/647 (0%) Query: 1 MGKIIGIDLGTTNSCVAVMEGNQPKVIENSEGARTTPSIIAYQEDGEILVGAPAKRQAVT 60 MGKIIGIDLGTTNSCVA+MEG +PKVIENSEGARTTPS+IAYQEDGEILVGAPAKRQAVT Sbjct: 1 MGKIIGIDLGTTNSCVAIMEGGKPKVIENSEGARTTPSVIAYQEDGEILVGAPAKRQAVT 60 Query: 61 NPKNTIYAAKRLIGRKFTEKEVQKDINLMPYQIVAADNGDAWIGVRDKKLAPPQISAEVL 120 NPKNT+YA KRLIGRKF EKEVQKDI +MPYQIV ADNGDAWI VRDKKLAPPQISAE L Sbjct: 61 NPKNTLYAVKRLIGRKFDEKEVQKDIGMMPYQIVKADNGDAWISVRDKKLAPPQISAETL 120 Query: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAFG 180 RKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAFG Sbjct: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAFG 180 Query: 181 LDKAEKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRLIDY 240 LDK KGDRKIAVYDLGGGTFD+SIIEIADVDGE QFEVLSTNGDTFLGGEDFDQR+IDY Sbjct: 181 LDKTGKGDRKIAVYDLGGGTFDISIIEIADVDGEMQFEVLSTNGDTFLGGEDFDQRVIDY 240 Query: 241 IIEEFKKINGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHLNLK 300 II+EFKKINGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHL +K Sbjct: 241 IIDEFKKINGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHLTMK 300 Query: 301 ITRAKLESLVEELIAKTIEPCRTAIKDAGVKVSDIDDVILVGGMTRMPKVIEKVKEFFGK 360 ITRAKLESLVEELI+KT+ P AIKDAGVKVSDIDD+ILVGGMTRMPKV EKVKEFFGK Sbjct: 301 ITRAKLESLVEELISKTLAPLSIAIKDAGVKVSDIDDIILVGGMTRMPKVQEKVKEFFGK 360 Query: 361 DPRRDVNPDEAVAVGAAIQGSVLSGDRKDVLLLDVTPLSLGIETMGGVMTKMIKKNTTIP 420 +PR+DVNPDEAVAVGAAIQGSVLSGDRKD+LLLDVTPLSLGIET+GGVMTKMI+KNTTIP Sbjct: 361 EPRKDVNPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETLGGVMTKMIQKNTTIP 420 Query: 421 TKFSQVFSTADDNQPAVTIKVYQGEREMAAGNKALGEFNLEGIPPAPRGTPQIEVTFDID 480 TKFSQVFSTADDNQPAVTIKV+QGEREMA GNKALGEFNLEGIPP+ RGTPQIEVTFDID Sbjct: 421 TKFSQVFSTADDNQPAVTIKVFQGEREMAVGNKALGEFNLEGIPPSARGTPQIEVTFDID 480 Query: 481 ANGILHVGAKDKATGKENKITIKANSGLNEEEIEKMVRDAEANAEEDKRLKELAESRNQG 540 ANGILHVGAKDKATGKENKITIKANSGL EEEI+KMV+DAEANAEEDKRLKE+AE+ N G Sbjct: 481 ANGILHVGAKDKATGKENKITIKANSGLTEEEIQKMVQDAEANAEEDKRLKEVAEAHNHG 540 Query: 541 DALVHSTRKALGEYGDKLEAGEKDVIEAAIKNLEEALKGDDKAAIDAKTEALSTAAQKLG 600 DALVHSTRK+L EYGDKLEAGEK+ IEAAIK+LEEALKG DKAAID K+ ALS AAQKLG Sbjct: 541 DALVHSTRKSLTEYGDKLEAGEKEKIEAAIKDLEEALKGSDKAAIDEKSAALSAAAQKLG 600 Query: 601 EKMYADQQAQAAAAGGAAGAAGAQAGAAGAA-PKDDNVVDADFKEVK 646 EKMYAD QAQ AA A A A A A + D+VVDADFKEVK Sbjct: 601 EKMYADMQAQQAAGAAAGDAHAAGADGQADAKAQHDDVVDADFKEVK 647 >gi|134095416|ref|YP_001100491.1| chaperone protein HscA [Herminiimonas arsenicoxydans] Length = 620 Score = 419 bits (1078), Expect = e-118, Method: Compositional matrix adjust. Identities = 251/620 (40%), Positives = 387/620 (62%), Gaps = 36/620 (5%) Query: 5 IGIDLGTTNSCVAVMEGNQPKVIENSEGARTTPSIIAYQEDGEILVGAPAKRQAVTNPKN 64 +GIDLGTTNS VA + + P+++ + EG PS++ Y ++G +G A+ T+PKN Sbjct: 22 VGIDLGTTNSLVATVRNSIPEILTDEEGRSLLPSVVHYLKNGSAHIGYKAQAAQNTDPKN 81 Query: 65 TIYAAKRLIGRKFTEKEVQKDINLMPYQIVAADNGDAWIGVRDKKLA----PPQISAEVL 120 TI + KR +GR K++ NL PY + D V+ K +A P ++SAE+L Sbjct: 82 TIVSVKRFMGRGL--KDIAYAENL-PYDFL-----DTPGMVQLKTVAGVKSPVEVSAEIL 133 Query: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAFG 180 +++ AED LG+++ AVITVPAYF+DAQRQATKDA ++AGL+V R++NEPTAAA+A+G Sbjct: 134 ATLRQQAEDALGDDLVGAVITVPAYFDDAQRQATKDAAKLAGLNVLRLLNEPTAAAIAYG 193 Query: 181 LDKAEKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRLIDY 240 LD +G AVYDLGGGTFDVSI+++ + FEVLST GD+ LGG+DFD RL + Sbjct: 194 LDNGSEG--VFAVYDLGGGTFDVSILKLT----KGVFEVLSTGGDSALGGDDFDHRLFCW 247 Query: 241 IIEE--FKKINGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHLN 298 IIE+ ++ +D S + A AK LSS +T I+ + +G VH+ Sbjct: 248 IIEQAGLAPLSEIDTSV-------LMVKAREAKELLSSKSETLIDA---VLTSGEEVHVT 297 Query: 299 LKITRAKLESLVEELIAKTIEPCRTAIKDAGVKVSDIDDVILVGGMTRMPKVIEKVKEFF 358 +T A + + L+ KTI P + A++DAG+ V D+D V++VGG TRMP + + V +FF Sbjct: 298 --VTAADFIQMTQHLVTKTITPTKKALRDAGLSVDDVDGVVMVGGATRMPHIRKAVGDFF 355 Query: 359 GKDPRRDVNPDEAVAVGAAIQGSVLSGDRK---DVLLLDVTPLSLGIETMGGVMTKMIKK 415 P +++PD+ VA+GAA+Q ++L+G+R D LLLDV PLSLGIETMGG++ K+I + Sbjct: 356 QSTPLANIDPDKVVALGAAVQANLLAGNRAAGDDWLLLDVIPLSLGIETMGGLVEKVIPR 415 Query: 416 NTTIPTKFSQVFSTADDNQPAVTIKVYQGEREMAAGNKALGEFNLEGIPPAPRGTPQIEV 475 N+TIP +Q F+T D Q A+ + + QGERE+ ++L +F L GIPP G +I V Sbjct: 416 NSTIPCARAQEFTTFKDGQTALAVHIVQGERELVTDCRSLAKFELRGIPPMAAGAARIRV 475 Query: 476 TFDIDANGILHVGAKDKATGKENKITIKANSGLNEEEIEKMVRDAEANAEEDKRLKELAE 535 T+ +DA+G+L V A++ +G E I++K + GL +++I +M++D+ +A+ D + L E Sbjct: 476 TYQVDADGLLSVSARELRSGVEASISVKPSYGLADDQIAQMLQDSFKSADVDMAARALRE 535 Query: 536 SRNQGDALVHSTRKALGEYGDKLEAGEKDVIEAAIKNLEEALKGDDKAAIDAKTEALSTA 595 + + + +V +T+ AL L E++ I A + ++ +A G D AI A +AL+ Sbjct: 536 EQVEAERIVLATQSALDADASLLSDNEREDIVALLDSVRQAGSGTDHLAIKAAVDALAHG 595 Query: 596 AQKLGEKMYADQQAQAAAAG 615 ++ + D+ ++A +G Sbjct: 596 TEEFAARRM-DRSVRSALSG 614 >gi|134094326|ref|YP_001099401.1| putative heat-shock protein Hsp 70 [Herminiimonas arsenicoxydans] Length = 416 Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 91/439 (20%), Positives = 169/439 (38%), Gaps = 93/439 (21%) Query: 1 MGKIIGIDLGTTNSCVAVMEGNQPKVIENSEGARTTPSIIAYQEDGE-ILVGAPAKRQAV 59 M G+D GT+NS V +++ +G T PS+I + D E + G A + Sbjct: 1 MANACGVDFGTSNSTVGWSRPGVSPLLQLEDGKVTLPSVIFFNADEEQVYYGRAALANYL 60 Query: 60 TNPKNTIY-AAKRLIGRKFTEKEVQKDINLMPYQIVAADNGDAWIGVRDKKLAPPQISAE 118 + + + K L+G + + + V K L + + Sbjct: 61 QGYEGRLMRSLKSLLGTSLIDDQTE---------------------VMGKALPFRTLLTQ 99 Query: 119 VLRKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQA-------TKDAGRIAGLDVKRIINE 171 + ++K+ AE G E + V+ P +F D +A + + G E Sbjct: 100 FIAELKRRAETAAGREFSSVVLGRPVFFVDGNEEADILAEDTLYEIAQSVGFRDIDFQYE 159 Query: 172 PTAAALAFGLDKAEKGDRKIAVYDLGGGTFDVSIIEIADVDGEK---QFEVLSTNGDTFL 228 P AA AF + + + + + D+GGGT D S++ +A +K + ++L+T G + Sbjct: 160 PIAA--AFDYESQIEREELVLIADIGGGTSDFSLVRLAPERAKKADRRDDILATGG-VHI 216 Query: 229 GGEDFDQRL------------------------IDYIIEEFKKINGL----------DLS 254 GG DFD+ L Y + + IN D+ Sbjct: 217 GGTDFDKYLSLTSIMPQLGLGSRLNNNNEVPSSYYYNLATWHTINLAYTQKTWLQIKDIY 276 Query: 255 KDAIALQRIKA---------------SAERAKIELSSSQQTEINEPYIAMANGAPVHLNL 299 +DA+ ++ + AE KI LS+ +T+ + + P H L Sbjct: 277 RDAMEKDKLDSLLHLIEHRSGHWLALKAEEGKIALSAELETQ-----LVLDRLVPAH-TL 330 Query: 300 KITRAKLESLVEELIAKTIEPCRTAIKDAGVKVSDIDDVILVGGMTRMPKVIEKVKEFFG 359 + R + + + +++A ++DAG+ +D V+ GG + + + EK+ Sbjct: 331 TLRRDEFDDAIHKMVAAVGSTVANLLRDAGITADQVDTVVFTGGSSGVHLLREKIGSLL- 389 Query: 360 KDPRRDVNPDEAVAVGAAI 378 + RR V D ++GA + Sbjct: 390 PNARR-VEGDLFGSIGAGL 407 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.312 0.131 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,139,653 Number of extensions: 48550 Number of successful extensions: 156 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 152 Number of HSP's successfully gapped: 3 Length of query: 646 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 558 Effective length of database: 710,387 Effective search space: 396395946 Effective search space used: 396395946 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 132 (55.5 bits)