BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0577.p
         (194 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095816|ref|YP_001100891.1| heat shock protein GrpE [Hermin...   240   4e-65

>gi|134095816|ref|YP_001100891.1| heat shock protein GrpE
           [Herminiimonas arsenicoxydans]
          Length = 178

 Score =  240 bits (612), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 118/176 (67%), Positives = 148/176 (84%), Gaps = 1/176 (0%)

Query: 20  DTAAAATGAANAAEQAAAAAPA-EPTLEEKLAAAEAKAAEMQDAFLRARAEGENIRRRAQ 78
           D    A  AA+  E A+A APA  PTLEE+LAA++ +  E+QD+FLRA+AE EN RRRAQ
Sbjct: 3   DQDKYAEQAASMEEPASADAPAIVPTLEEQLAASQLQVQELQDSFLRAKAENENFRRRAQ 62

Query: 79  EDIAKAHKFAIEGFAESLLAVKDSLEMALKIENASLESLKEGVDMTLKQLTSAFEKNKLQ 138
           ED+ +AHKFAIEGFAE+L+ VKDSLEMAL+++  S+ SLKEGV+MTLKQL++AFEKN+L 
Sbjct: 63  EDVTRAHKFAIEGFAEALVPVKDSLEMALQVDTPSIASLKEGVEMTLKQLSAAFEKNRLL 122

Query: 139 EVSPQAGEKLDPMKHQAVSAVPAEQEANTVVAVLQKGYMISERLLRPALVTVAQGK 194
           E+ PQ G+KLDPMKHQA+S VPA+QEANT+V+ LQKGY+I++RLLRPALVTVAQ K
Sbjct: 123 EIKPQQGDKLDPMKHQAISVVPADQEANTIVSTLQKGYLIADRLLRPALVTVAQEK 178


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.307    0.119    0.299 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 210,271
Number of extensions: 6238
Number of successful extensions: 23
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 117
Effective length of database: 746,632
Effective search space: 87355944
Effective search space used: 87355944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 126 (53.1 bits)