BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0575.p
         (369 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095818|ref|YP_001100893.1| ferrochelatase [Herminiimonas a...   534   e-153

>gi|134095818|ref|YP_001100893.1| ferrochelatase [Herminiimonas
           arsenicoxydans]
          Length = 368

 Score =  534 bits (1375), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 246/367 (67%), Positives = 301/367 (82%), Gaps = 1/367 (0%)

Query: 1   MAFRKEPPYTHGSPASTAVVLVNLGTPDAPHAGALRRYLKQFLSDPRVVEIPRAVWWVIL 60
           M+F  EPPYTHGS   TAV+LVNLGTPDAP   A+R YL +FLSDPRVVEIPR +WW IL
Sbjct: 1   MSFHTEPPYTHGSLPKTAVLLVNLGTPDAPTTSAVRTYLNEFLSDPRVVEIPRVIWWFIL 60

Query: 61  NGIILPFRSSKSAEKYASIWTAEGSPLRVHTQRQAAALGVQLAARGHHQLQVVYAMRYGT 120
             IILPFRS KSA+KYA+IW+ EGSPLRVHT++QA  L   L ARGH +++V YAMRYG+
Sbjct: 61  KLIILPFRSGKSAKKYAAIWSNEGSPLRVHTEKQAKLLTGYLGARGH-EVRVEYAMRYGS 119

Query: 121 PSLPQVLDQLKEQGCSRILVLPAYPQYSGTTTASIFDAVFDHYRQVRNIPELRLIRNYHD 180
           PS+P+VL +LK  GC RILVLPAYPQYSGTTTASIFDAVF HY + RN+PELR +++YHD
Sbjct: 120 PSVPEVLRKLKADGCDRILVLPAYPQYSGTTTASIFDAVFKHYARERNVPELRFVKHYHD 179

Query: 181 QDGYLQALRQSVLDHWEINGRPDKLLMSFHGVPKRTLMLGDPYHCECYKTARLLAQALGL 240
            + Y++AL++SVL HW++ GRPDKL+MSFHGVPKRTL LGDPY CEC+KTARLLA+ L L
Sbjct: 180 HESYIRALQKSVLAHWDMAGRPDKLVMSFHGVPKRTLTLGDPYFCECHKTARLLAKELDL 239

Query: 241 NEDQYMVTFQSRFGKAEWLQPYTAPTAQELGRQGVRRIDVMCPGFTSDCLETLEEIAMEV 300
            EDQY+VTFQSRFGKAEWLQPYTAPT Q+L + GV+R+DV+CPGFTSDCLETLEEI +EV
Sbjct: 240 TEDQYVVTFQSRFGKAEWLQPYTAPTLQKLAKSGVKRVDVLCPGFTSDCLETLEEIGIEV 299

Query: 301 KQDFLHAGGKEFHFIPCLNESPAWIAGMVELVEQHLAGWPTMSNAAAREEMARQAVIAAE 360
           ++DFL AGG++F++I CLNE+ AWI  + ++ E H+ GWPT+ + A  EE   +A I+  
Sbjct: 300 RRDFLQAGGQDFNYIACLNENDAWIKALAQIAELHMIGWPTILSPALLEERNEEARISLA 359

Query: 361 RAKALGA 367
            A+ LGA
Sbjct: 360 EAQRLGA 366


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.135    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 719,066
Number of extensions: 29435
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 286
Effective length of database: 726,862
Effective search space: 207882532
Effective search space used: 207882532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)