BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0574.p
         (548 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095819|ref|YP_001100894.1| DNA recombination and repair pr...   848   0.0  

>gi|134095819|ref|YP_001100894.1| DNA recombination and repair
           protein [Herminiimonas arsenicoxydans]
          Length = 549

 Score =  848 bits (2191), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/549 (76%), Positives = 478/549 (87%), Gaps = 1/549 (0%)

Query: 1   MLRTLTIRDFVIVDAIELEFARGFSVFTGETGAGKSILIDALALAMGGRGDPSVVREGAA 60
           MLRTL+IRDFVIVDAIELEF+ GFSVFTGETGAGKSILIDALALA+GGRGD SVVREGAA
Sbjct: 1   MLRTLSIRDFVIVDAIELEFSSGFSVFTGETGAGKSILIDALALALGGRGDASVVREGAA 60

Query: 61  KADVSADFTATPEVMAWLQEQELAAEHDGVLLRRVIDNAGRSKAYINGSAATAAQLRQVG 120
           KAD++A+F+A+ E+ AWL E E   E  G LLRRVIDNAGRSKA+ING AATA QLR++G
Sbjct: 61  KADITAEFSASAELDAWLAENEFTNEEGGALLRRVIDNAGRSKAFINGIAATATQLRELG 120

Query: 121 EMLVDIHGQHAHQSLMKADAQRQLLDSQAGLLEQAREVAASYKTWRALARQREQFEQDAR 180
           E LVDIHGQHAHQSL+K D QR LLD+QAGL E+ + VA +YKTWRALARQRE+FE +A+
Sbjct: 121 EKLVDIHGQHAHQSLLKQDMQRVLLDNQAGLQEEVKAVAGAYKTWRALARQREEFETNAK 180

Query: 181 NVLLERERLEWQVAELHKLAVKPGEWAEISAEHSRLSHAAALIGGAQEALGVISESES-P 239
           NVLLERERLEWQV EL KL+VKPGEWA+I+ EHSRLSHAA+LI GAQ+AL +IS++E+ P
Sbjct: 181 NVLLERERLEWQVGELEKLSVKPGEWADITNEHSRLSHAASLIKGAQDALTLISDAETAP 240

Query: 240 ILSQLSSITQKLSKLVDVDTALKPVLDALEPAQIQLQEAVYALNDYLGRVELDPARLQEV 299
           +LSQLSS+  ++ KL+D+D  L+PVLDALEPA+IQLQEAVYALNDYL RVELDPARL+EV
Sbjct: 241 MLSQLSSLNIRIGKLIDLDAGLQPVLDALEPARIQLQEAVYALNDYLSRVELDPARLREV 300

Query: 300 EERLEAIHSTARKFHVQPDELPEEYRKLSEQLKQLADASDLDALRVQEEKLKAAYLTLAQ 359
           E RLE IHS +RKFHV  D+LP+E   LS QLKQLADASDLDALRVQEEKL+AAY+  AQ
Sbjct: 301 ETRLENIHSASRKFHVAADDLPQELETLSAQLKQLADASDLDALRVQEEKLQAAYMAAAQ 360

Query: 360 KLSKARAKAAASLGEAVTAAMQDLSMAGGRFEIALNEVEPAAYGLEQVEFLVAGHAGVAP 419
           KLSKAR+KAA +LG+AVT AMQ+LSM GG+F IAL   EPA+YG+EQ+EF+VA HAG  P
Sbjct: 361 KLSKARSKAARALGDAVTTAMQELSMTGGKFAIALQPCEPASYGVEQIEFMVAAHAGTTP 420

Query: 420 RALAKVASGGELARISLAISVIASAATTVPTLIFDEVDSGIGGAVAEVVGRLLKRLGQER 479
           R LAKVASGGELARI+LAISVI S+AT  PTLIFDEVDSGIGG VAEVVGRLL+RLGQ+R
Sbjct: 421 RPLAKVASGGELARIALAISVITSSATATPTLIFDEVDSGIGGGVAEVVGRLLRRLGQDR 480

Query: 480 QVLCVTHLPQVASQANQHYQVKKRSEGGKTLSDIDGLDAKARVEEIARMLGGLEITATTR 539
           QVLCVTHLPQVASQANQH+QV K+S  GKT S I  LD  ARVEEIARMLGGLEITATTR
Sbjct: 481 QVLCVTHLPQVASQANQHFQVSKQSSNGKTASSIAALDDHARVEEIARMLGGLEITATTR 540

Query: 540 KHARELLAS 548
            HARELLAS
Sbjct: 541 THARELLAS 549


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.129    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 947,228
Number of extensions: 37050
Number of successful extensions: 231
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 2
Length of query: 548
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 462
Effective length of database: 716,977
Effective search space: 331243374
Effective search space used: 331243374
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)