BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0573.p
         (305 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095820|ref|YP_001100895.1| NAD kinase [Herminiimonas arsen...   392   e-111

>gi|134095820|ref|YP_001100895.1| NAD kinase [Herminiimonas
           arsenicoxydans]
          Length = 312

 Score =  392 bits (1008), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/312 (61%), Positives = 237/312 (75%), Gaps = 7/312 (2%)

Query: 1   MWPIKLPVQAAVPKTVAIVGKFQAV-------GIAQILSDIAVFLESHGHTVVFETETAD 53
           M P      A+  +T+AI  K +          I   L+ IA  L   G  VVF ++TA+
Sbjct: 1   MLPTSHSYTASSFQTIAIFAKQKPSETVHSVDDITHSLTQIAEALAKTGRRVVFGSQTAE 60

Query: 54  NIALQGYDSMTPEQIGQHADVAIVVGGDGTMLGIARQLAPYNVPLIGINQGRLGFITDIA 113
             +L  Y+++   QIG+ ADVAI+VGGDGTMLGIARQLAPY VPLIGINQGRLGF+TDI+
Sbjct: 61  RFSLGSYEALDLAQIGELADVAIIVGGDGTMLGIARQLAPYKVPLIGINQGRLGFMTDIS 120

Query: 114 QDRMIPALGEMLEGKVEAESRSLLEARVYREGGEIFRALALNDVVVARGSTSGMVELRVE 173
            + M+P L +ML GKV +E RSLL+  + R G  +   LA NDVV++RGS SGMVEL V 
Sbjct: 121 LEDMMPVLQDMLNGKVSSEKRSLLQGTLTRNGAVMHHTLAFNDVVLSRGSGSGMVELCVH 180

Query: 174 VDGRFMYNQRSDGLIVATPTGSTAYALSAGGPILHPSLHGIVMVPISPHSLSNRPITLSD 233
           VDG FMYNQRSDGLIVATPTGSTAY+LSAGGP+LHPSL GIV+VPI+PH+LSNRPI + D
Sbjct: 181 VDGHFMYNQRSDGLIVATPTGSTAYSLSAGGPLLHPSLSGIVLVPIAPHALSNRPIVVPD 240

Query: 234 SCEIVIQVVAGREVSANFDMQSLTSVLHGDRIVIRRSAHKITFLHPEGWSYFDTLREKLH 293
           + EIVI+VV GR+ + NFDMQS+  +LHGDRI+++RS H +TFLHPEGWSY+DTLREKLH
Sbjct: 241 ASEIVIEVVGGRDSNVNFDMQSVARLLHGDRIIVKRSDHAVTFLHPEGWSYYDTLREKLH 300

Query: 294 WNEYPSIEGRLQ 305
           WNEYPS++GRL+
Sbjct: 301 WNEYPSVQGRLK 312


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 595,549
Number of extensions: 25402
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 224
Effective length of database: 733,452
Effective search space: 164293248
Effective search space used: 164293248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)