BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0572.p
         (245 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095821|ref|YP_001100896.1| putative hydrolase [Herminiimon...   266   5e-73

>gi|134095821|ref|YP_001100896.1| putative hydrolase [Herminiimonas
           arsenicoxydans]
          Length = 234

 Score =  266 bits (681), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 134/228 (58%), Positives = 159/228 (69%)

Query: 15  AAPAPIQAVLFDLDDTLWAIEPVLVRAEGLLYDWLREHAPAVVAAHTIASLRERRMALMQ 74
           A P+ ++AVLFDLDDTLW + P L +AE +LYDWL  H P V    + A LRE RM L+ 
Sbjct: 5   AHPSSVKAVLFDLDDTLWPLAPTLFKAEAVLYDWLALHIPGVTRRFSNAELRELRMELLP 64

Query: 75  TDPAYRIDLWKLRHTALSQVFREHDVDLALVDPAMALFSEARSTVALFDDVEPALLRLKG 134
           TDP Y+ ++W LRH AL+   R    +  LVD AMA+FSEAR+ V  FDDV P L RL  
Sbjct: 65  TDPQYQFNVWALRHAALTHACRLSSENHELVDQAMAVFSEARNAVTPFDDVVPGLARLNE 124

Query: 135 KLTLGSVSNGFADLERIGLAQHFGVSIAAHRFGRAKPDPAIFHAACAALQAAPAATVYVG 194
           +  +GSVSNGFADL  IG+++HF  SIAAH+FG AKP P IF AAC AL  AP   VYVG
Sbjct: 125 RFRVGSVSNGFADLSAIGISRHFQYSIAAHQFGSAKPHPEIFLAACDALSIAPHEAVYVG 184

Query: 195 DDPLLDVQGAQQAGLRAVWMNRFDRTLPAGILPDAICRDLHELHDWLQ 242
           DDPLLD+QGAQ AGL+AVWMNRF RTLP  I+P A    LHEL  WL+
Sbjct: 185 DDPLLDIQGAQNAGLQAVWMNRFQRTLPEHIVPAASVTTLHELEAWLK 232


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 449,070
Number of extensions: 17266
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 166
Effective length of database: 740,042
Effective search space: 122846972
Effective search space used: 122846972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)