BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0571.p
         (342 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095822|ref|YP_001100897.1| heat-inducible transcription re...   566   e-163

>gi|134095822|ref|YP_001100897.1| heat-inducible transcription
           repressor [Herminiimonas arsenicoxydans]
          Length = 342

 Score =  566 bits (1460), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 280/341 (82%), Positives = 314/341 (92%), Gaps = 2/341 (0%)

Query: 1   MQLDNRARTLLKALVERYIADGQPVGSRALSKLSGLELSPATIRNIMADLEEMGFVASPH 60
           MQLDNRA+TLLKALVERYIADGQPVGSR LSK+SGL+LSPATIRNIMADLEEMGFVASPH
Sbjct: 1   MQLDNRAQTLLKALVERYIADGQPVGSRELSKISGLDLSPATIRNIMADLEEMGFVASPH 60

Query: 61  TSAGRVPTPRGYRMFVDTLLTVEAIDESALEGRLQARMQHSGSSQKIITNAAQVLSSLSQ 120
           TSAGRVPTPRGYR+FVDTLLTV+ IDESALE +LQA +Q +GS  KII NAA +LSSLS+
Sbjct: 61  TSAGRVPTPRGYRVFVDTLLTVQTIDESALESKLQATLQ-TGSQHKIIANAAGILSSLSE 119

Query: 121 FAGVVMTPKRESAFQQIEFLRLSEKRILLVIVDQGGDVQNRMLLTEVDYTPSQLTQAANY 180
           FAG+V+TP+RES FQQI+FLRLSEKRILLVIV  GGDVQNR+LLT+VDY+P+QL QAANY
Sbjct: 120 FAGIVITPRRESVFQQIDFLRLSEKRILLVIVGPGGDVQNRLLLTDVDYSPTQLVQAANY 179

Query: 181 INQHYAGQSFDQVRLHLQGELRQLRDDMTVLMQAAVEAGSDAMSEEADNNVVISGERNLL 240
           INQ+Y G SFD VR+ LQGEL+ LRDDMT LMQAAVEAGSDAM++ +D +VVISGERNLL
Sbjct: 180 INQNYGGLSFDDVRIRLQGELKALRDDMTRLMQAAVEAGSDAMNDNSD-DVVISGERNLL 238

Query: 241 SVTDLSSNMNSLRRLFDMFEQKTGLLQLLDVSSKATGVQIFIGGESQLVPMDDMSIVTAP 300
           SV+DLSSNM SLR+LFD+FEQKT L+QLL+VSSKATGVQIFIGGES LVPMD MS+VTAP
Sbjct: 239 SVSDLSSNMVSLRKLFDLFEQKTSLMQLLEVSSKATGVQIFIGGESNLVPMDQMSVVTAP 298

Query: 301 YEVNGRIVGTLGVIGPTRMAYERVIPIVDITAKLLSSALSQ 341
           Y VNG++VGTLGVIGPTRMAYERVIPIVDITAKLLS+ALS 
Sbjct: 299 YTVNGQVVGTLGVIGPTRMAYERVIPIVDITAKLLSNALSH 339


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.132    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 568,522
Number of extensions: 21896
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 260
Effective length of database: 730,157
Effective search space: 189840820
Effective search space used: 189840820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)