BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0569.p
         (188 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095824|ref|YP_001100899.1| hypothetical protein HEAR2656 [...   160   3e-41

>gi|134095824|ref|YP_001100899.1| hypothetical protein HEAR2656
           [Herminiimonas arsenicoxydans]
          Length = 216

 Score =  160 bits (406), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 75/117 (64%), Positives = 94/117 (80%), Gaps = 2/117 (1%)

Query: 39  ASADTSGVKVTGKSSSLFGFLRPYRIDIQQGNFVSKEMVAQLRPGLTRDQVRFVLGTPLL 98
           A++  +GV+ T +++   G  RPYR DIQQGNFVS+EMVAQL+ G+T+DQV F+LGTPLL
Sbjct: 95  ATSGATGVQ-TKQANRFLGIFRPYRPDIQQGNFVSQEMVAQLKEGMTQDQVIFLLGTPLL 153

Query: 99  TDMFHSNRWDYDFRLAKGNGEIMTSRVTVFFKDDLLDHVQGGQDLPTESEYLTLITD 155
            D+FH++RWDY FRL KGNGEI TSRVTVFFKD L+ H +GG DLPTE +YL  I+D
Sbjct: 154 NDLFHADRWDYAFRLQKGNGEITTSRVTVFFKDKLVSHFEGG-DLPTEKDYLDRISD 209


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 347,038
Number of extensions: 13492
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 111
Effective length of database: 746,632
Effective search space: 82876152
Effective search space used: 82876152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)