BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0567.p
         (231 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095826|ref|YP_001100901.1| biopolymer transport ExbB prote...   356   e-100
gi|134093598|ref|YP_001098673.1| biopolymer transport ExbB prote...   200   5e-53
gi|134095581|ref|YP_001100656.1| inner membrane protein [Hermini...    92   2e-20

>gi|134095826|ref|YP_001100901.1| biopolymer transport ExbB protein
           [Herminiimonas arsenicoxydans]
          Length = 230

 Score =  356 bits (913), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/226 (78%), Positives = 195/226 (86%), Gaps = 3/226 (1%)

Query: 2   EPNVGFAHYWAQGDAVSHSVAYLLLIMSIASWYYILSKAWTALRIRRGSNALEQFWQAPT 61
           E  +G +HYWAQGDAVSH+VAY LLIMSI SWYYILSK W+A RIRR + ALE FWQAPT
Sbjct: 7   EQGLGLSHYWAQGDAVSHAVAYALLIMSILSWYYILSKGWSAWRIRRSAAALENFWQAPT 66

Query: 62  LADASAAMQRLDSEQIYTPMAERAAEAADIGSRQQGAPSLNAATDPSELITRTLRREINR 121
           L DA AA++  DSE +YTP+A ++ EAA+I      A SLNA TDP ELITRTLR+EINR
Sbjct: 67  LPDAIAAIRLTDSENVYTPLAAQSVEAANITPH---ANSLNANTDPGELITRTLRQEINR 123

Query: 122 VSARLERGLTLLASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALIMT 181
           VS+RLE GLTLLASVGSTAPF+GLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALIMT
Sbjct: 124 VSSRLENGLTLLASVGSTAPFIGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALIMT 183

Query: 182 ALGLLVAIPAVLAYNAFTRINRVVLAELDGFAHDLHAYLTTGERVG 227
           ALGL VAIPAVLAYNAFTR+NR+ LAELD FAHDLHAYLTTG RVG
Sbjct: 184 ALGLAVAIPAVLAYNAFTRVNRITLAELDAFAHDLHAYLTTGTRVG 229


>gi|134093598|ref|YP_001098673.1| biopolymer transport ExbB protein
           [Herminiimonas arsenicoxydans]
          Length = 242

 Score =  200 bits (509), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 111/221 (50%), Positives = 142/221 (64%), Gaps = 6/221 (2%)

Query: 6   GFAHYWAQGDAVSHSVAYLLLIMSIASWYYILSKAWTALRIRRGSNAL-EQFWQAPTLAD 64
           G    W+QGD V+  VA LL+ MSIASWY I +KA   ++ RR + A   +FW A +L++
Sbjct: 7   GLESLWSQGDFVTKGVAILLVAMSIASWYVIATKALQLMQYRRAARAAGHEFWDATSLSE 66

Query: 65  ASAAMQRLDSEQIYTPMAERAAEAADIGSRQQGAPSLNAATDPSELITRTLRREINRVSA 124
            +A    L S   +  +AE    A       +G   L+     S+ IT +LR+ I+  SA
Sbjct: 67  GTA---TLGSGNPFASIAEAGVTAMRHHEAHKG--HLHDELSVSDWITLSLRQAIDETSA 121

Query: 125 RLERGLTLLASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALIMTALG 184
           +L+ G+ +LASVGSTAPFVGLFGTVWGIYHALVA+  SG   IDKVAGPVGEALIMTALG
Sbjct: 122 KLQTGMAVLASVGSTAPFVGLFGTVWGIYHALVAIGTSGQASIDKVAGPVGEALIMTALG 181

Query: 185 LLVAIPAVLAYNAFTRINRVVLAELDGFAHDLHAYLTTGER 225
           L VAIPA   YNA  R N+ ++A+++ F  DLHA   TG R
Sbjct: 182 LAVAIPATFGYNALVRGNKSLIAKMNKFGFDLHALFVTGAR 222


>gi|134095581|ref|YP_001100656.1| inner membrane protein
           [Herminiimonas arsenicoxydans]
          Length = 230

 Score = 92.4 bits (228), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 109/237 (45%), Gaps = 27/237 (11%)

Query: 4   NVGFAHYWAQGDAVSHSVAYLLLIMSIASWYYILSKAWTALRIRRGSNALEQ-FWQAPTL 62
           ++ F H  A    +   V  LL+ +S+ SW YI  K +     R  +   E+ FW    L
Sbjct: 6   DLSFVHLIANASVLVQLVMALLVGVSVMSWTYIFRKMFAIKNARTQTEEFERAFWSGGDL 65

Query: 63  ----ADASAAMQRLDSEQIYTPMAERAAEAADIGSRQQGAPSLN---AATDPSELITR-- 113
                DA++  ++       T   ER  EA        G    N   A+ DPS+   R  
Sbjct: 66  NALYQDATSNRRKSSGS---TGALERIFEA--------GMSEFNKSRASHDPSQASVRLD 114

Query: 114 ----TLRREINRVSARLERGLTLLASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDK 169
                +R    R    LE  L  LASVGS +P+VGLFGTVWGI ++   ++      +  
Sbjct: 115 GARRAMRAAYQREMDGLESHLAFLASVGSVSPYVGLFGTVWGIMNSFRGLANVQQATLAA 174

Query: 170 VAGPVGEALIMTALGLLVAIPAVLAYNAFTR-INRVVLAELDGFAHDLHAYLTTGER 225
           VA  + EALI TA+GL  AIPAV+AYN ++  I+R+ +   + F  +    L    R
Sbjct: 175 VAPGIAEALIATAIGLFAAIPAVVAYNRYSHDIDRLAM-RFESFVEEFSNILQRQTR 230


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 433,135
Number of extensions: 16230
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 3
Length of query: 231
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 152
Effective length of database: 740,042
Effective search space: 112486384
Effective search space used: 112486384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)