BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0566.p
         (147 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095827|ref|YP_001100902.1| biopolymer transport protein Ex...   166   6e-43
gi|134093597|ref|YP_001098672.1| putative biopolymer transport p...   155   1e-39
gi|134095582|ref|YP_001100657.1| putative biopolymer transport p...    65   2e-12

>gi|134095827|ref|YP_001100902.1| biopolymer transport protein ExbD
           [Herminiimonas arsenicoxydans]
          Length = 127

 Score =  166 bits (419), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 84/121 (69%), Positives = 106/121 (87%)

Query: 15  MADINVTPMVDVMLVLLVIFIITAPMFTHALKLDLPTAQSSPAPEKPETITLGIDAAGKL 74
           MADINVTPMVDVMLVLLVIFIITAP+FTHA+KLDLP+AQS+PAP +P TI+L I+  G +
Sbjct: 1   MADINVTPMVDVMLVLLVIFIITAPLFTHAIKLDLPSAQSAPAPTEPSTISLSINGEGAI 60

Query: 75  YWNDQPVSQAEMDTRLAAAAEKKPQPELQLRADKSTRYQTIAELMSAAQGAGLTKLGFVT 134
           +WN+  V+Q E+ +R A AA+++PQP+LQLRAD+ TRY+ IA++M+AAQG GLTKLGFVT
Sbjct: 61  FWNNDAVTQDELTSRFAIAAKQQPQPQLQLRADRGTRYEVIAQVMAAAQGNGLTKLGFVT 120

Query: 135 D 135
           D
Sbjct: 121 D 121


>gi|134093597|ref|YP_001098672.1| putative biopolymer transport
           protein ExbD [Herminiimonas arsenicoxydans]
          Length = 137

 Score =  155 bits (391), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 72/135 (53%), Positives = 103/135 (76%), Gaps = 2/135 (1%)

Query: 1   MSFGGFNDNQNSAPMADINVTPMVDVMLVLLVIFIITAPMFTHALKLDLPTAQSSPAPEK 60
           MS G  +D+ +  P  +IN TP+VDVMLVLL+IFI+T P+  HA+KLDLP A + P   K
Sbjct: 1   MSMGSLSDDDDFNP--EINTTPLVDVMLVLLIIFIMTIPVMNHAVKLDLPRAANQPNEVK 58

Query: 61  PETITLGIDAAGKLYWNDQPVSQAEMDTRLAAAAEKKPQPELQLRADKSTRYQTIAELMS 120
           PETI L IDAAGK+YWN++ + ++++  R+A AA+  PQPEL LRA+++T Y+ +A++M+
Sbjct: 59  PETINLSIDAAGKVYWNNEILDESQLAARVADAAKVTPQPELHLRAERTTPYEKVAQVMA 118

Query: 121 AAQGAGLTKLGFVTD 135
           AAQ  GL+K+GFVT+
Sbjct: 119 AAQSGGLSKMGFVTE 133


>gi|134095582|ref|YP_001100657.1| putative biopolymer transport
           protein ExbD/TolR; putative TOLR-related transport
           transmembrane protein [Herminiimonas arsenicoxydans]
          Length = 146

 Score = 65.1 bits (157), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 13/146 (8%)

Query: 1   MSF--GGFNDNQNSAPMADINVTPMVDVMLVLLVIFIITAPMFTHALKLDLPT-AQSSPA 57
           MSF  G     +N    ++INV P +DVM+VLLVIF++TAPM   + +++LP  A+S+  
Sbjct: 1   MSFTSGSMRGGRNRKFKSEINVVPYIDVMMVLLVIFMVTAPMVNPS-EIELPNAAKSTLP 59

Query: 58  PEKPETITLGIDAA---------GKLYWNDQPVSQAEMDTRLAAAAEKKPQPELQLRADK 108
           P +   I L  DA+         G     +   ++ E+  +L       P   + + ADK
Sbjct: 60  PTEYIRIDLKADASATVSVQGKKGGAKPGETVATRGELGKKLQTLVADNPDIAVMIAADK 119

Query: 109 STRYQTIAELMSAAQGAGLTKLGFVT 134
           + +Y  + + +S A+  G++++G  T
Sbjct: 120 NIKYDEVIQAISEAKKLGISRVGLAT 145


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.127    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 277,544
Number of extensions: 10472
Number of successful extensions: 27
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 4
Length of query: 147
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 73
Effective length of database: 756,517
Effective search space: 55225741
Effective search space used: 55225741
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 124 (52.4 bits)