BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0563.p (364 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 240 7e-65 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 240 9e-65 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 210 7e-56 gi|134096584|ref|YP_001101659.1| molybdate ABC transporter ATP-b... 145 3e-36 gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 139 3e-34 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 240 bits (613), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 143/319 (44%), Positives = 197/319 (61%), Gaps = 13/319 (4%) Query: 8 VSIRLQQCAKSFANGTRALQPLDLDIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDMGGR 67 +SI ++ K F N AL + L+ GE LLGPSGCGKTT LR+IAGLE PD G + Sbjct: 1 MSIEVKNINKKFGNFV-ALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHG-Q 58 Query: 68 VFFGDEDVTALPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIPAAER------AER 121 V ED +A + +R VG VFQ+YALF +M+V ENIA+G+++R PAA R E+ Sbjct: 59 VLLDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVR--PAATRPSESVIKEK 116 Query: 122 VESLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVR 181 V LLE+V L L+ R QLSGGQ+QR+ALARALA+EPRVLLLDEP ALDAK+R+ +R Sbjct: 117 VTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELR 176 Query: 182 SDLNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANEFVADF 241 L +L L +T+I+VTHDQ EA+ + D+IV+M +G + QIG P+++Y +PA+ FV F Sbjct: 177 RWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYGF 236 Query: 242 IGAMNRVHGIVSGDRLLLPTGSLPLVDTLDAALQGQPACAMFRPEDVEVVDITEADAQCV 301 +G +N G V +L + + A Q RP D+E VD + A+ + Sbjct: 237 LGNVNLFRGRVHEG--VLQSSGIAFDAPDHAKTQDARGIGYVRPHDLE-VDRYTSGAEGI 293 Query: 302 RGKLINTFFLGDRTRFEIE 320 +L +G + E+E Sbjct: 294 VVQLRRAHAIGPLAQLELE 312 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 240 bits (612), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 131/286 (45%), Positives = 180/286 (62%), Gaps = 7/286 (2%) Query: 10 IRLQQCAKSFANGTRALQPLDLDIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDMGGRVF 69 + ++ + F + T + + L I GE LLGPSGCGKTT LRMIAG + PD G++ Sbjct: 4 LEIRNLTRRFGDNT-VVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPD-AGKIL 61 Query: 70 FGDEDVTALPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIPAAERAERVESLLEMV 129 D+T +P E+R V VFQNYALFP+M+V NIA+ +++ P +E ++V+ LE V Sbjct: 62 LDGVDLTGVPPEQRVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEALEDV 121 Query: 130 HLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSDLNKLLR 189 L G + R +LSGGQ+QRV++ARAL P++LLLDEPL+ALDA+LRE ++ +L L + Sbjct: 122 RLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQK 181 Query: 190 SLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANEFVADFIGAMNRVH 249 +GIT +YVTHDQ EA+AL RI VM +G I Q+ P IY +P + FVADFIG N Sbjct: 182 EVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADFIGTCNLFD 241 Query: 250 GIVS---GDRLLLPTGSLPLVDTLD-AALQ-GQPACAMFRPEDVEV 290 G V+ GD +LL + V L A +Q G RPE ++V Sbjct: 242 GTVTQIAGDTMLLDVPGMGAVKALTVAGVQVGSKGTIALRPEKIQV 287 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 210 bits (535), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 135/346 (39%), Positives = 195/346 (56%), Gaps = 20/346 (5%) Query: 26 LQPLDLDIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDMGGRVFFGDEDV-----TALPI 80 + L + G+ LLG SGCGKTT LR IAG E P G + G +++ TA P Sbjct: 34 VHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAGFE-PLTEGSITLGGKEISNAHFTATP- 91 Query: 81 EKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIPAAERAERVESLLEMVHLQGLSHRRVD 140 E R +G+VFQ+YALFP++SV +N+ +G+ RK+ A ER R+ +LL +V L + Sbjct: 92 ETRQIGVVFQDYALFPHLSVADNVGFGL--RKLAAPERQARIAALLTLVGLASQGKKFPH 149 Query: 141 QLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSDLNKLLRSLGITAIYVTH 200 +LSGGQ+QRVALARALA +P +LLLDEP + LD LRE + S++ +L+ +G TA+ VTH Sbjct: 150 ELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVLVTH 209 Query: 201 DQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANEFVADFIGAMNRVHGIVS--GDRLL 258 DQ EA A+ D+I VM+ G I Q + +Y+ PAN FVADFIG GI+ + Sbjct: 210 DQHEAFAIADQIGVMQDGVIVQWDSAYNLYHRPANRFVADFIGLGVFTPGIIDQQTQNVN 269 Query: 259 LPTGSLPLVDTLDA----ALQGQPACAMFRPEDVEVVDITEADAQCVRGKLINTFFLGDR 314 + GSLPL ++ A GQ + R +DV D + A+ VR FL Sbjct: 270 IELGSLPLCHGMETCDPNAPDGQQVDVLLRADDVVHDDTSPLQAEVVRKAFRGADFL--- 326 Query: 315 TRFEIEIGVERPVIAETSRRGWWQAGQQIGIRVSAEALVKLAPRAE 360 + +++ + ++A G++IGIR+ A+ +V E Sbjct: 327 --YTLKLPSGQLLLALVPSHHDHALGERIGIRLEADHVVTFTKENE 370 >gi|134096584|ref|YP_001101659.1| molybdate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 362 Score = 145 bits (366), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 97/282 (34%), Positives = 150/282 (53%), Gaps = 22/282 (7%) Query: 35 PGETLV-LLGPSGCGKTTTLRMIAGLE-----FPDMGGRVFFGDEDVTALPIEKRGVGMV 88 PG + L G SG GKTT LR+IAGLE + ++ G V+ D LP +R +G V Sbjct: 28 PGRGITALFGASGSGKTTCLRVIAGLERAADVYLEVNGEVWQDDAHNIFLPTHQRPLGYV 87 Query: 89 FQNYALFPNMSVGENIAYGMKIRKIPAAERAERVESLLEMVHLQGLSHRRVDQLSGGQKQ 148 FQ +LF +++V N+ YGM R+I + R ++ + ++ + L R+ D+LSGG++Q Sbjct: 88 FQEASLFAHLNVQRNLEYGM--RRIAKSARHVSLDHAVSLLDIGHLLQRKPDKLSGGERQ 145 Query: 149 RVALARALAMEPRVLLLDEPLTALDAKLREAVRSDLNKLLRSLGITAIYVTHDQGEAMAL 208 RVA+ARALA PR+LL+DEPL ALDAK + + L +L L I +YV+H E L Sbjct: 146 RVAIARALATSPRILLMDEPLAALDAKRKAEIMPYLERLHDELDIPVLYVSHSADEVARL 205 Query: 209 GDRIVVMERGKISQIGTPQEI---------YYHPANEFVADFIGAMNRVH----GIVSGD 255 D +V++E G++ G Q++ + A+ V I A + + SG Sbjct: 206 ADHLVLLETGRVIASGATQDLLTRLDLEVAHGDAASALVTATISAHDPDYLLSSATFSGG 265 Query: 256 RLLLPTGSLPLVDTLDAALQGQPACAMFRPE-DVEVVDITEA 296 +LLLP S + + +Q + P+ D +++I A Sbjct: 266 QLLLPQQSATIGQQVRIRVQARDVSLSLAPQRDSSILNIVAA 307 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 139 bits (349), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 89/231 (38%), Positives = 134/231 (58%), Gaps = 11/231 (4%) Query: 10 IRLQQCAKSFANGT---RALQPLDLDIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDMGG 66 I +Q SF AL ++L + GE + L+G SGCGK+T L +IAGL GG Sbjct: 9 IDIQHAEMSFHTKKGVFNALTDINLTVAKGEFITLIGHSGCGKSTLLNLIAGLT-QSTGG 67 Query: 67 RVFFGDEDVTALPIEKRGVGMVFQNYALFPNMSVGENIAYGMK--IRKIPA-AERAERVE 123 + G+ ++ A P +R V VFQN++L P ++ EN+ ++ K+ A+ R Sbjct: 68 MLLCGNREI-AGPSPERAV--VFQNHSLLPWLTCYENVYLAVERVFGKVEGKAKLRARTR 124 Query: 124 SLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSD 183 + L +V L +R +++SGG KQRV +ARAL+MEP+VLL+DEP ALDA R ++ + Sbjct: 125 AALSLVGLTHAEQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDE 184 Query: 184 LNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYY-HP 233 L K++ + G T + VTHD EA+ L D+IV++ G + IG E+ HP Sbjct: 185 LLKIVAATGSTVVMVTHDVDEAVLLSDKIVMLTNGPSATIGEILEVKLAHP 235 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 684,743 Number of extensions: 29827 Number of successful extensions: 267 Number of sequences better than 1.0e-08: 48 Number of HSP's gapped: 187 Number of HSP's successfully gapped: 52 Length of query: 364 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 281 Effective length of database: 726,862 Effective search space: 204248222 Effective search space used: 204248222 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)