BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0562.p
         (267 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096009|ref|YP_001101084.1| spermidine/putrescine ABC trans...    74   7e-15
gi|134095673|ref|YP_001100748.1| thiosulfate ABC transporter mem...    57   7e-10

>gi|134096009|ref|YP_001101084.1| spermidine/putrescine ABC
           transporter inner membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 258

 Score = 73.9 bits (180), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 129/259 (49%), Gaps = 25/259 (9%)

Query: 15  LLVCAFLVVPVVLSMLAGVTENFFVGLSSGLTLRWVAQVW---DMYQPTIWRSLIIALAC 71
           +LV AFL VP+ + ++    ++       G TL W   ++   +M +     SLIIAL  
Sbjct: 15  VLVYAFLYVPLAIVVMYSFNDSRLNAEWVGFTLDWYRVLFADEEMLRAA-GNSLIIALVS 73

Query: 72  LVVTLVAGVPLAYMLARYRGGHSRLARVIEELLMMPVAVPGLATALALIMAYGQWRDFRA 131
             V+ V G    + L RY+       R ++ L++ P+A+P +   ++L++ +    +   
Sbjct: 74  SAVSTVLGTMAGFALHRYK------IRTLQILVLTPIAIPEILVGVSLLIFFVML-NITL 126

Query: 132 SILFILVGHVIFTLPFM---VRPVLAVMQSSQLAQLEEAAASLGAGRMRRFFGIVIPNCA 188
            +L +++ H+ F+L F+   VR  L+ M  S    L EAA   GA   + F  + +P   
Sbjct: 127 GMLSVMLAHIAFSLGFVAIVVRSRLSGMDES----LTEAARDCGATPWQAFRRVTLPLIM 182

Query: 189 SGILAGALMVVTLSIGEFNITWMLHTPLTQTLPVGLADAYASMRL----EVGSAYTLIFF 244
            G++AGALM  TLSI +F IT+      TQTLP+ +   Y+ +++    EV +  TL+  
Sbjct: 183 PGVVAGALMAFTLSIDDFVITFFTAGANTQTLPLQI---YSMIKIAVTPEVNAVSTLLMA 239

Query: 245 FMIIPLLIGMQWVTQATRK 263
             +I ++I  +    A R 
Sbjct: 240 LTLILIVIASKLSPNAFRS 258


>gi|134095673|ref|YP_001100748.1| thiosulfate ABC transporter
           membrane protein [Herminiimonas arsenicoxydans]
          Length = 281

 Score = 57.4 bits (137), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 15/155 (9%)

Query: 64  SLIIALACLVVTLVAGVPLAYMLARYRGGHSRLARVIEELLMMPVAVPGLATALALIMAY 123
           +L+ A    V+    G  LA+++ RY     RL   I+ L+ +P A+P     + L + +
Sbjct: 67  TLMGAFYSTVIVTFIGFLLAWIITRYDFPGRRL---IDSLVDLPFALPTSVAGVTLSVLF 123

Query: 124 ------GQWRDF---RASILF--ILVGHVIFTLPFMVRPVLAVMQSSQLAQLEEAAASLG 172
                 GQW D    + S  F  I+V  +  +LPF+VR V  V++  +  +LEEAA  LG
Sbjct: 124 MPTGWLGQWFDIFGIKISYAFPGIVVAMIFTSLPFIVRSVQPVLEDME-NELEEAALMLG 182

Query: 173 AGRMRRFFGIVIPNCASGILAGALMVVTLSIGEFN 207
           A + + F+ +++P     ++ G+      S+GEF 
Sbjct: 183 ANKWQIFWRVILPTLIPALITGSSQAFIRSLGEFG 217


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.332    0.141    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 446,154
Number of extensions: 16360
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 6
Length of query: 267
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 187
Effective length of database: 736,747
Effective search space: 137771689
Effective search space used: 137771689
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 128 (53.9 bits)