BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0561.p (294 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094076|ref|YP_001099151.1| sulfate ABC transporter membran... 87 1e-18 gi|134095673|ref|YP_001100748.1| thiosulfate ABC transporter mem... 87 1e-18 gi|134094077|ref|YP_001099152.1| sulfate ABC transporter membran... 76 2e-15 gi|134095674|ref|YP_001100749.1| thiosulfate permease W [Hermini... 68 5e-13 gi|134096009|ref|YP_001101084.1| spermidine/putrescine ABC trans... 67 9e-13 >gi|134094076|ref|YP_001099151.1| sulfate ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 289 Score = 86.7 bits (213), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 96/180 (53%), Gaps = 8/180 (4%) Query: 104 LQRHRFPGQSLLLAMLTFPLAFPGVVVGFMVIMLAGRQGLIGALSNWLFGESLVFAYSLA 163 L R+ FPG+ ++ AM+ P A P V G + L G IG +L + A++ Sbjct: 95 LVRYTFPGKKMIDAMVDLPFALPTAVAGIALTALYAPNGWIG---RYLEMVGIKVAFTPL 151 Query: 164 GLFLGYLYFSIPRVILTVVAAAEKLDPSLEEAARSLGARPWQVLLHVVLPALLPALISSG 223 G+ + + +P V+ T+ E + LEEAA SLGA WQ V+ P +LPAL++ Sbjct: 152 GVIVALTFIGLPFVVRTIQPVLEDAERELEEAAVSLGASHWQTFTKVIFPTVLPALLTGF 211 Query: 224 AICFATSVGAFGTAFTLAANI----DVLPMTIYNEFTGYANFATAASLSIVLGVITWAML 279 A+ FA + G +G+ +A N+ ++ P+ I + Y ++A A ++++V+ + ++ ML Sbjct: 212 ALAFARATGEYGSVIFIAGNMPMVSEITPLFIVTKLEQY-DYAGATAIAVVMLLASFLML 270 >gi|134095673|ref|YP_001100748.1| thiosulfate ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 281 Score = 86.7 bits (213), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 109/217 (50%), Gaps = 17/217 (7%) Query: 64 MAYLSVLTNRHYFASLVSTLVLSAVVTA-----ATLAISVFVGLFL----QRHRFPGQSL 114 + Y+S ++ Y+ ++ VL + + I F+G L R+ FPG+ L Sbjct: 40 LVYVSGMSFDQYWFAITDARVLQSYKVTLMGAFYSTVIVTFIGFLLAWIITRYDFPGRRL 99 Query: 115 LLAMLTFPLAFPGVVVGFMVIMLAGRQGLIGALSNWLFGESLVFAYSLAGLFLGYLYFSI 174 + +++ P A P V G + +L G +G + +FG + +Y+ G+ + ++ S+ Sbjct: 100 IDSLVDLPFALPTSVAGVTLSVLFMPTGWLGQWFD-IFGIKI--SYAFPGIVVAMIFTSL 156 Query: 175 PRVILTVVAAAEKLDPSLEEAARSLGARPWQVLLHVVLPALLPALISSGAICFATSVGAF 234 P ++ +V E ++ LEEAA LGA WQ+ V+LP L+PALI+ + F S+G F Sbjct: 157 PFIVRSVQPVLEDMENELEEAALMLGANKWQIFWRVILPTLIPALITGSSQAFIRSLGEF 216 Query: 235 GTAFTLAANI----DVLPMTIYNEFTGYANFATAASL 267 G +A NI +V + ++ Y N+ AA++ Sbjct: 217 GAVIMIAGNIPFQTEVTSLMLFVRLQEY-NYPAAAAI 252 >gi|134094077|ref|YP_001099152.1| sulfate ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 287 Score = 76.3 bits (186), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 96/203 (47%), Gaps = 10/203 (4%) Query: 61 EGAMAYLSVLTNRHYFASLVSTLVLSAVVTAATLAISVFVGLFLQRHRFPGQSLLLAMLT 120 +G AY++ + +++ TL+ +A+ L V + + F G+S LL ++ Sbjct: 47 KGWDAYIAAILEEDALSAIKLTLITAAIAVPLNLIFGVAASWCIAKFDFRGKSFLLTLID 106 Query: 121 FPLAFPGVVVGFMVIMLAGRQGLIGALSNWLFGESLVFAYSLAGLFLGYLYFSIPRVILT 180 P + V+ G + ++L G QG G WL ++ +++ G+ L ++ + P V Sbjct: 107 LPFSVSPVISGLIYVLLFGAQGWFGG---WLIEHNIKILFAVPGIVLATIFVTFPFVARE 163 Query: 181 VVAAAEKLDPSLEEAARSLGARPWQVLLHVVLPALLPALISSGAICFATSVGAFGTAFTL 240 ++ + EEAA LGA W+ HV LP + L+ +C A ++G FG + Sbjct: 164 LIPLMQSQGSEEEEAALVLGASGWKTFWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVV 223 Query: 241 AANI----DVLPMTI---YNEFT 256 + +I + +P+ + YNE+ Sbjct: 224 SGHIRGQTNTIPLQVEILYNEYQ 246 >gi|134095674|ref|YP_001100749.1| thiosulfate permease W [Herminiimonas arsenicoxydans] Length = 283 Score = 68.2 bits (165), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 92/191 (48%), Gaps = 4/191 (2%) Query: 46 LLPMVRLVGVGASGPEGAMAYLSVLTNRHYFASLVSTLVLSAVVTA-ATLAISVFVGLFL 104 L+ +V L+ + G + L + Y + +L+AV+T L + + + Sbjct: 26 LMLIVPLILIFTQAFSGGVELLRQNLSEDYMQHALGLTLLAAVLTVPINLVFGILLAWCV 85 Query: 105 QRHRFPGQSLLLAMLTFPLAFPGVVVGFMVIMLAGRQGLIGALSNWLFGESLVFAYSLAG 164 + F G+ LL+ ++ P A VV GF +++ G +G+IG WL+ + + ++ G Sbjct: 86 THYDFFGRRLLITLVEIPYATSPVVAGFCYLVVYGLEGVIG---QWLYEKDVQLMFAWPG 142 Query: 165 LFLGYLYFSIPRVILTVVAAAEKLDPSLEEAARSLGARPWQVLLHVVLPALLPALISSGA 224 + + ++ + P + ++ +K E AA SLGA WQ+ HV LP + AL+ Sbjct: 143 IIMVTVFVTAPYIARILMPLMQKQGTEEEIAALSLGATGWQIFRHVTLPNIKWALLYGAV 202 Query: 225 ICFATSVGAFG 235 I A +VG FG Sbjct: 203 ITNARAVGEFG 213 >gi|134096009|ref|YP_001101084.1| spermidine/putrescine ABC transporter inner membrane protein [Herminiimonas arsenicoxydans] Length = 258 Score = 67.4 bits (163), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 19/174 (10%) Query: 81 STLVLSAVVTAATLAISVFVGLFLQRHRFPGQSLLLAMLTFPLAFPGVVVGFMVIMLAGR 140 ++L+++ V +A + + G L HR+ ++L + +LT P+A P ++VG Sbjct: 65 NSLIIALVSSAVSTVLGTMAGFAL--HRYKIRTLQILVLT-PIAIPEILVG--------- 112 Query: 141 QGLIGALSNWLFGESLVFAYSLAGLFLGYLYFSIPRVILTVVAAAEKLDPSLEEAARSLG 200 +S +F L + + L ++ FS+ V + V + +D SL EAAR G Sbjct: 113 ------VSLLIFFVMLNITLGMLSVMLAHIAFSLGFVAIVVRSRLSGMDESLTEAARDCG 166 Query: 201 ARPWQVLLHVVLPALLPALISSGAICFATSVGAFG-TAFTLAANIDVLPMTIYN 253 A PWQ V LP ++P +++ + F S+ F T FT AN LP+ IY+ Sbjct: 167 ATPWQAFRRVTLPLIMPGVVAGALMAFTLSIDDFVITFFTAGANTQTLPLQIYS 220 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.326 0.138 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 507,169 Number of extensions: 18913 Number of successful extensions: 139 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 10 Length of query: 294 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 213 Effective length of database: 733,452 Effective search space: 156225276 Effective search space used: 156225276 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)