BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0557.p (882 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095829|ref|YP_001100904.1| leucyl-tRNA synthetase [Hermini... 1555 0.0 gi|134094215|ref|YP_001099290.1| methionyl-tRNA synthetase [Herm... 64 4e-11 >gi|134095829|ref|YP_001100904.1| leucyl-tRNA synthetase [Herminiimonas arsenicoxydans] Length = 881 Score = 1555 bits (4026), Expect = 0.0, Method: Compositional matrix adjust. Identities = 742/882 (84%), Positives = 799/882 (90%), Gaps = 1/882 (0%) Query: 1 MQDKYSPAEVEQSAQQHWNAIDAYKTVENARDKEGRDKKKFYACSMLPYPSGKLHMGHVR 60 MQDKYSPA+VE+SA HW A DAYK VE+A+DK G+DKKKFYACSMLPYPSGKLHMGHVR Sbjct: 1 MQDKYSPADVEKSAHDHWQATDAYKAVEHAKDKNGKDKKKFYACSMLPYPSGKLHMGHVR 60 Query: 61 NYTINDVMYRYLRMNGYNVLMPMGWDAFGMPAENAAMANGVPPAQWTYSNIEYMKSQMQS 120 NYTINDVMYRYLRMNGYNVLMPMGWDAFGMPAENAAMAN VPPAQWTY+NIE+MK+QM S Sbjct: 61 NYTINDVMYRYLRMNGYNVLMPMGWDAFGMPAENAAMANNVPPAQWTYANIEHMKTQMAS 120 Query: 121 MGLAIDWSREMTACRPEYYKWNQWMFLKMLEKGIIYKKTGTVNWDPIDQTVLANEQVIDG 180 MGLAIDWSREMTAC+PEYYKWNQWMFLKMLEKGIIYKKTG+VNWDPIDQTVLANEQVIDG Sbjct: 121 MGLAIDWSREMTACKPEYYKWNQWMFLKMLEKGIIYKKTGSVNWDPIDQTVLANEQVIDG 180 Query: 181 RGWRSGAVIEKREIPMYYAKITDYADELLEHVETKLPGWPERVRLMQANWIGKSTGVRFA 240 RGWRSGA+IEKREIPMYYA+ITDYA+ELL+HVE KLPGWPERVR MQANWIGKSTGVRFA Sbjct: 181 RGWRSGALIEKREIPMYYARITDYAEELLDHVEHKLPGWPERVRTMQANWIGKSTGVRFA 240 Query: 241 FPHQIKGADGQLINDGKLFVFTTRADTIMGVTFCAVAPEHPLATLAAENNPALQAFIAEC 300 F H IK D +LINDGKL+VFTTRADTI GVTFCAVA EHPLAT AA++NP L FIAEC Sbjct: 241 FTHDIKD-DDKLINDGKLWVFTTRADTIKGVTFCAVAAEHPLATFAAKSNPELAEFIAEC 299 Query: 301 KQGSVIEADMATMEKKGMPTGLYVTHPLTGDQVEVWIGNYVLITYGDGAVMGVPAHDERD 360 K GSVIEADMATMEKKGMPTGL+V HPLTG VEVW+GNYVLITYGDGAVMGVPAHDERD Sbjct: 300 KLGSVIEADMATMEKKGMPTGLFVKHPLTGSLVEVWVGNYVLITYGDGAVMGVPAHDERD 359 Query: 361 FAFARKYNLPIKQVIAVEGKTYSTEAWEEWYGDKESGKTIASGKYDGLGYQAAVDAVAAD 420 FAFA+KY LPI QVI VEGKT+S W +WY DKE+G+ I SGKYDGL YQ AV+ +AAD Sbjct: 360 FAFAQKYVLPIHQVIDVEGKTFSEVTWHDWYADKENGRCINSGKYDGLNYQQAVNTIAAD 419 Query: 421 LAAQGLGEKKVTFRLRDWGISRQRYWGTPIPIIHCPDCGDVPVPEQDLPVVLPEDCVPDG 480 L GLGEKK+T+RLRDWGISRQRYWGTPIP+I+C DCG VPVPE+DLPVVLPEDCVPDG Sbjct: 420 LEELGLGEKKITYRLRDWGISRQRYWGTPIPMINCADCGAVPVPEKDLPVVLPEDCVPDG 479 Query: 481 SGNPLNKHEQFLKVDCPKCGKPARRETDTMDTFVDSSWYYMRYTSPGSNDAMVDARNDYW 540 SGNPLNKHE FLK DCPKCGKPARRETDTMDTFVDSSWYYMRY SP SNDAMVD+RNDYW Sbjct: 480 SGNPLNKHEAFLKCDCPKCGKPARRETDTMDTFVDSSWYYMRYCSPNSNDAMVDSRNDYW 539 Query: 541 MPMDQYIGGIEHAVLHLLYARFWTKVMRDFGLVKFDEPFTNLLTQGMVLNETYYREDAAG 600 MPMDQYIGGIEHAVLHLLYARFWTKVMRDFGLVKFDEPFTNLLTQGMVLNETYYREDA+G Sbjct: 540 MPMDQYIGGIEHAVLHLLYARFWTKVMRDFGLVKFDEPFTNLLTQGMVLNETYYREDASG 599 Query: 601 KKTWYNPADVDLSFDDKGRPVSAVLKEDGQPVMIGGTEKMSKSKNNGIDPQAQIDQYGAD 660 KKTW+NPADV L DDKGRPVSA+L D QPV IGGTEKMSKSKNNGIDPQAQIDQYGAD Sbjct: 600 KKTWFNPADVQLELDDKGRPVSAILNNDRQPVEIGGTEKMSKSKNNGIDPQAQIDQYGAD 659 Query: 661 TARLFTMFASPPEQTLEWSGAGVEGANRFLRRVWAFGYNNAARITAAGAIDAAQLDDGLK 720 TARLFTMFASPPEQTLEWSGAGVEGANRFLRRVW + YN +ARI AA A D ++L D K Sbjct: 660 TARLFTMFASPPEQTLEWSGAGVEGANRFLRRVWTYAYNQSARIAAATASDFSKLSDAQK 719 Query: 721 TLRREVHKVLQQADNDFKRIQYNTVVSACMKMLNTLEAAKPAAGAAGDAVLAECFSIFLR 780 TLRREVHK+LQQADND+KRIQYNTVVSA MKMLNTLE AK AA +AV+AE SIFLR Sbjct: 720 TLRREVHKILQQADNDYKRIQYNTVVSAGMKMLNTLEGAKLDESAASNAVIAEGLSIFLR 779 Query: 781 VLNPVAPHITHVLWQQLGYAGTHGDILDAAWPQVDAAALEQSEIKLVVQVNGKLRGEVTV 840 +LNPVAPHITHVLWQ+LG+A HGDILDAAWPQVDA ALEQ+EI++++QVNGKLRG + V Sbjct: 780 ILNPVAPHITHVLWQELGFAKVHGDILDAAWPQVDAGALEQAEIEMMIQVNGKLRGSIVV 839 Query: 841 PKEADKATIEAAALANEDVKKFLTGAPKKVIVVPGKLVNIVA 882 K+ADKATIEA ALANE V+KF+ G PKK+IVVPGKLVNIVA Sbjct: 840 AKDADKATIEATALANEAVRKFIEGTPKKIIVVPGKLVNIVA 881 >gi|134094215|ref|YP_001099290.1| methionyl-tRNA synthetase [Herminiimonas arsenicoxydans] Length = 710 Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 6/141 (4%) Query: 39 KKFYACSMLPYPSGKLHMGHVRNYTINDVMYRYLRMNGYNVLMPMGWDAFGMPAENAAMA 98 +K + + LPY +G H+GH+ Y D+ R+ RM G V DA G P AA Sbjct: 7 RKLFVTTALPYANGAFHIGHIMEYIQADIWVRFQRMQGNQVDFVGADDAHGAPIMIAAEK 66 Query: 99 NGVPPAQWTYSNIEYMKSQ-MQSMGLAID-WSREMTACRPEYYKWNQWMFLKMLEKGIIY 156 G+ P Q+ SNI + Q + +A D WS + PE ++ Q ++L + + G+I Sbjct: 67 AGLTPQQFV-SNIAAGRKQYLDGFHIAFDNWS---STDSPENHQLAQQIYLDLKKAGLIA 122 Query: 157 KKTGTVNWDPIDQTVLANEQV 177 KT +DP L + + Sbjct: 123 SKTVEQFFDPEKNMFLPDRYI 143 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.134 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,735,225 Number of extensions: 74384 Number of successful extensions: 197 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 195 Number of HSP's successfully gapped: 2 Length of query: 882 Length of database: 1,000,347 Length adjustment: 90 Effective length of query: 792 Effective length of database: 703,797 Effective search space: 557407224 Effective search space used: 557407224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)