BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0554.p
         (422 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095832|ref|YP_001100907.1| gamma-glutamyl phosphate reduct...   714   0.0  

>gi|134095832|ref|YP_001100907.1| gamma-glutamyl phosphate reductase
           [Herminiimonas arsenicoxydans]
          Length = 421

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/420 (83%), Positives = 381/420 (90%)

Query: 3   NIELYMNRIGQQARAASRAMARADTAAKNQALLLIAAAIRRDAELLRAANALDLDAARAN 62
           +I+ YM  +GQ+AR ASRAMA+ADTAAKNQAL LIAAAIRRDA++LRAAN +DL AAR N
Sbjct: 2   DIKQYMKEVGQRARKASRAMAKADTAAKNQALSLIAAAIRRDADILRAANQVDLVAARLN 61

Query: 63  GLAEAMLDRLTLSDKAIATMAEGLEQIASLPDPIGEISNMKYRPTGIQVGQMRVPLGVIG 122
           GL  AMLDRLTLSDKAIATMAEGLEQI +LPDPIGEISNMKYRPTGIQVGQMRVPLGVIG
Sbjct: 62  GLEPAMLDRLTLSDKAIATMAEGLEQIVALPDPIGEISNMKYRPTGIQVGQMRVPLGVIG 121

Query: 123 IIYEARPNVTVDAAGLCIKSGNATILRGGSEAIHCNQALAKLVKEGLAGAGLPEEAVQVV 182
           IIYEARPNVTVDAAGLCIKSGNATILRGGSEAIHCNQALAKLV EGLAGAGLP +AVQ+V
Sbjct: 122 IIYEARPNVTVDAAGLCIKSGNATILRGGSEAIHCNQALAKLVSEGLAGAGLPADAVQIV 181

Query: 183 ETTDRAAVGALITMQEYVDVIVPRGGKGLIERLMKEAKVPMIKHLDGICHVYIDDRADTR 242
           ETTDRAAVG LITM EYVDVIVPRGGKGLIERLMKE+KVPMIKHLDGICHVYIDD+AD  
Sbjct: 182 ETTDRAAVGELITMPEYVDVIVPRGGKGLIERLMKESKVPMIKHLDGICHVYIDDKADPA 241

Query: 243 KALDVAFNAKCHRYGTCNTMETLLVSRNIAAAILPPLSELYRVKEVELRCDAEAAEILAD 302
           KALD+AFNAKCHRYGTCNTMETLLV+R IA  ILP L++LY  ++VELR D EA  IL  
Sbjct: 242 KALDIAFNAKCHRYGTCNTMETLLVARAIAPTILPALAKLYATRDVELRGDDEARAILQG 301

Query: 303 YPFLKAATDEDWDTEYLAPILAVKVVADVEEAIEHINRHSSQHTDSIVTEDYTRAMRFLR 362
           Y  L AA+ EDW TEYL  IL+VK+VAD++EAI+HIN +SS+HTDSIVTEDYTRAMRFLR
Sbjct: 302 YAHLAAASAEDWSTEYLDAILSVKIVADMDEAIDHINTYSSKHTDSIVTEDYTRAMRFLR 361

Query: 363 EVDSASVMVNASTRFADGFEYGLGAEIGISNDKLHARGPVGLEGLTSLKYVVLGQGQVRQ 422
           EVDSASVM+NASTRFADGFEYGLGAEIGISNDKLHARGPVGL+GLTSLKYVV G G+VR+
Sbjct: 362 EVDSASVMINASTRFADGFEYGLGAEIGISNDKLHARGPVGLDGLTSLKYVVFGHGEVRE 421


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 671,320
Number of extensions: 27379
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 338
Effective length of database: 723,567
Effective search space: 244565646
Effective search space used: 244565646
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)