BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0551.p
         (418 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095836|ref|YP_001100911.1| hypothetical protein HEAR2668 [...   644   0.0  

>gi|134095836|ref|YP_001100911.1| hypothetical protein HEAR2668
           [Herminiimonas arsenicoxydans]
          Length = 409

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/412 (73%), Positives = 348/412 (84%), Gaps = 5/412 (1%)

Query: 6   THYSYFCPCPRGLEVALAEELNEIAQHAGTAANLKVHNQVPGGVHCSGTLLAAYQMNLHS 65
           + +SYFCPCPRGLE+ALAEELNEIA   G+   LKVH QVPGGVHCSGTL  AY++NLHS
Sbjct: 3   SSHSYFCPCPRGLEIALAEELNEIAAAPGSGNTLKVHTQVPGGVHCSGTLQDAYRINLHS 62

Query: 66  RIASRVLLRMGHGSYKNENDIYDLTLAQAWEDWFKVSHTIRVDLTAVKSPLRSLEFTTLK 125
           RIASRVL+RM H SY  ENDIYDLTLAQ WEDWF V HTIR+D+TA+KSPLRSLEFTTLK
Sbjct: 63  RIASRVLMRMAHASYTTENDIYDLTLAQPWEDWFAVHHTIRIDVTAIKSPLRSLEFTTLK 122

Query: 126 IKDAICDRFLDQFKLRPSVNTRTPDMRIAGFVDAHNFTVYLDTSGEALFKRGWREETGDA 185
           IKDAICDRF D +  RPSV+T+ PDMRI GF+DA  FT+YLDTSGEALFKRGWR +TGDA
Sbjct: 123 IKDAICDRFRDIYNERPSVDTKMPDMRIVGFLDARTFTLYLDTSGEALFKRGWRLDTGDA 182

Query: 186 PLRENLAAGLLRTAGWKPGVPLFDPMCGSGTILAEAAQIIAGVPPGARRRFAFEKFSNFD 245
           PLRENLAAGLLRTAGWKPG+ LFDPMCGSGTILAEAAQ++AG+PPG RR FAFEKF+ F 
Sbjct: 183 PLRENLAAGLLRTAGWKPGMTLFDPMCGSGTILAEAAQMLAGIPPGLRRNFAFEKFAGFS 242

Query: 246 ADAWFGIKGDFKPNPIPTTPTLFGSDISGDMVELTRKNLLRAGVHFEVPLKQIEAQEIKP 305
            + W  IK   K NPIP  PT+FGSDISGDMV +TR NL +AG+ F+VPLKQIEAQE+K 
Sbjct: 243 KEEWAAIKNSVKANPIPAEPTIFGSDISGDMVAMTRSNLNKAGITFDVPLKQIEAQEVKA 302

Query: 306 PLDAEGQPLVGIILSNPPYGERIGVRGDRALPTEELFTQFFSAFSSTLKQRFAGWRVFLF 365
           P +       GI+L+NPPYGERIGVRGD  +  +++  +FFSAF +TLKQRFAGW+VFLF
Sbjct: 303 PSETP-----GILLTNPPYGERIGVRGDSTIDDDDMAKEFFSAFGTTLKQRFAGWKVFLF 357

Query: 366 SADLGLPKLMRLKESRKTPFFNGALECRLFRFDMVAGYNRREEAKPVSRDSE 417
           +ADLGLPKL+RLKE+RKTPFFNGALECRLFRFDMVAG+NRRE+AKP +  +E
Sbjct: 358 TADLGLPKLLRLKEARKTPFFNGALECRLFRFDMVAGFNRREQAKPKTDAAE 409


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 833,215
Number of extensions: 35460
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 334
Effective length of database: 723,567
Effective search space: 241671378
Effective search space used: 241671378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)