BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0549.p
         (279 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095510|ref|YP_001100585.1| putative catalytic LigB subunit...   161   3e-41

>gi|134095510|ref|YP_001100585.1| putative catalytic LigB subunit of
           aromatic ring-opening dioxygenase [Herminiimonas
           arsenicoxydans]
          Length = 269

 Score =  161 bits (408), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 108/273 (39%), Positives = 145/273 (53%), Gaps = 20/273 (7%)

Query: 6   DSLHLPSLFVSHGS-PMLAVE-PG------RTGPLLAGIGAAL-PRPRGIVVMSPHWETF 56
           +S  LP+LF+ HG  P   ++ PG      R    L G+ AA+  RP+ I+++S HWE  
Sbjct: 2   NSKKLPTLFIPHGGGPCFFMDWPGDPHMWDRMADFLRGVDAAVGTRPKAILIISGHWEED 61

Query: 57  TPRVGSQAQPRVIHDFGGFPPALYELDYPAPGAPALAEHVAQRLRDGGLPAHTDGGWGLD 116
              VGS  QP +I+D+ GFP   Y L YPAPGAP LA  V   L + GLPA  D   G D
Sbjct: 62  EFTVGSNPQPSLIYDYQGFPAHTYALTYPAPGAPELAARVQNLLVEAGLPAQLDTQRGWD 121

Query: 117 HGAWVPLRYLYPQADVPVIQLSLQSQQPPAYHFQVGQLLAPLAREGILLIGSGSFTHNLR 176
           HG ++PL+ +YP ADVP++QLS++     A H + GQ L  L  EG+L+IGSG   HN+R
Sbjct: 122 HGVFIPLKVMYPNADVPIVQLSMKKGLDTATHLRAGQALQALREEGVLIIGSGMSFHNMR 181

Query: 177 ELRRTDSAGSDAPHALEFLQWFLD--RMQAGDLQALFGYRTTAPHAVRTHPSDEHLLSLF 234
                  A  DA    +F  W  +    +      L  +   APHA +  P  +HLL L 
Sbjct: 182 GF---SPAYKDASQ--QFDDWLANMATQEEAARNTLLQHWQDAPHARQVQPHPDHLLPLM 236

Query: 235 FAMGAA-DDWTRLVHLDSGSTYHSLRMDAFAFG 266
            A GAA  D  R +  D   T  ++ + A AFG
Sbjct: 237 VAAGAAGSDKGRRIFED---TVMNVVVSAIAFG 266


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 595,253
Number of extensions: 27520
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 198
Effective length of database: 733,452
Effective search space: 145223496
Effective search space used: 145223496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)