BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0545.p
         (400 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095617|ref|YP_001100692.1| putative ammonium transporter [...   647   0.0  
gi|134093433|ref|YP_001098508.1| ammonium transporter [Herminiim...   135   3e-33

>gi|134095617|ref|YP_001100692.1| putative ammonium transporter
           [Herminiimonas arsenicoxydans]
          Length = 400

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/400 (79%), Positives = 359/400 (89%)

Query: 1   VDDHKNGADALFILLGAIMILAMHAGFAFLELGTVRKKNQVNALVKILADFAVSTIVYFF 60
           +D  K+G DALFI+LGAIM+LAMHAGFAFLELGTVRKKNQVNALVKIL DFAVSTI YFF
Sbjct: 1   MDALKHGTDALFIMLGAIMVLAMHAGFAFLELGTVRKKNQVNALVKILVDFAVSTIAYFF 60

Query: 61  IGYYVAYGVSFFAGAETLAQKSGFELVKFFFLLTFAAAIPAIISGGIAERSKFNPQLVAT 120
           +GY VAYGVSFF  AE L Q++GFELVKFFFLLTFAAAIPAIISGGIAER++F+PQL+AT
Sbjct: 61  VGYSVAYGVSFFGSAEVLTQRNGFELVKFFFLLTFAAAIPAIISGGIAERARFHPQLLAT 120

Query: 121 AVLVGLVYPFFEGIAWNQHLGVQAWLAARFGAQFHDFAGSIVVHAVGGWIALPAILLLGA 180
           A++VGLVYP FEGIAWNQH GVQAWL A FGA FHDFAGSIVVHAVGGWIALPA+LLLGA
Sbjct: 121 ALIVGLVYPLFEGIAWNQHFGVQAWLHATFGANFHDFAGSIVVHAVGGWIALPAVLLLGA 180

Query: 181 RRGRYSKEGAVAAHPPSNIPFLALGAWILTVGWFGFNVMSAQTLEKMNGLVAMNSLMAMA 240
           RRGRY+KEG +AAHPPS+IPFLALGAWILT+GWFGFNVMSAQT+E+MNGLVA+NSLMAM 
Sbjct: 181 RRGRYTKEGGIAAHPPSSIPFLALGAWILTIGWFGFNVMSAQTMEQMNGLVAVNSLMAMV 240

Query: 241 GGTLVALLMGRNDPGFAYNGPLAGLVAVCAGSDLMHPLGALITGGIAGAIFVWMFTRTQN 300
           GGTL A L G+NDPG+ +NGPLAGLVA+CAGS++MHPLGAL+TG +AG +FV MF+ TQN
Sbjct: 241 GGTLAAFLAGKNDPGYVHNGPLAGLVAICAGSNIMHPLGALVTGAVAGFVFVGMFSLTQN 300

Query: 301 KWKIDDVLGVWPLHGLCGLWGGLAAGIFGLQALGGRGGVSFMAQLIGSLMGIAIAALGGW 360
           KWKIDDVLGVWPLHGLCG WGGLAAGIFGL+A GG GGVSFM+QL G+ +GIAIA +GG 
Sbjct: 301 KWKIDDVLGVWPLHGLCGAWGGLAAGIFGLKAFGGLGGVSFMSQLFGTALGIAIALIGGT 360

Query: 361 IVYGLLKKAVGIRLDPEQEFEGADLAIHKISSTAERETSW 400
           ++YG LK  +G+ LD EQEF GADL+IH +S+T ERET W
Sbjct: 361 LIYGGLKLTMGLWLDAEQEFNGADLSIHNVSATPERETYW 400


>gi|134093433|ref|YP_001098508.1| ammonium transporter
           [Herminiimonas arsenicoxydans]
          Length = 466

 Score =  135 bits (341), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 124/412 (30%), Positives = 197/412 (47%), Gaps = 39/412 (9%)

Query: 6   NGADALFILLGAIMILAMH-AGFAFLELGTVRKKNQVNALVKILADFAVSTIVYFFIGYY 64
           N  D  ++L   ++++ M   G A    G  R KN ++ L+++   FA+ T+++   GY 
Sbjct: 66  NTGDTAWMLTSTMLVILMTIPGLALFYGGLGRSKNMLSVLMQVFVLFALITVLWAIYGYS 125

Query: 65  VAY--GVSFFAGAETL-------AQKSGF--ELVKFFFLLTFAAAIPAIISGGIAERSKF 113
           + +  G SF+   E L          SG   E V   F  TFAA   A+I G  AER KF
Sbjct: 126 MVFAGGGSFYGTFEKLFLGGIKPDTLSGTIPEYVFVAFQSTFAAITCALIVGAFAERMKF 185

Query: 114 NPQLVATAVLVGLVYPFFEGIAWNQH--LGVQAWLAARFGAQFHDFAGSIVVHAVGGWIA 171
              +  + +     Y     + W     L V+  L         DFAG  VVH   G   
Sbjct: 186 AAVIAFSVLWFTFSYIPIAHMVWATGGLLFVEGAL---------DFAGGTVVHINAGVAG 236

Query: 172 LPAILLLGARRGRYSKEGAVAAHPPSNIPFLALGAWILTVGWFGFNVMSAQTLEKMNGLV 231
           L    ++G R G + KE    A PP ++    +GA +L VGWFGFN  SA     + GL 
Sbjct: 237 LVGAYMVGKRVG-FGKE----AMPPHSLTLTMVGASLLWVGWFGFNAGSALGANGVAGLA 291

Query: 232 AMNSLMAMAGGTLV-----ALLMGRNDPGFAYNGPLAGLVAVCAGSDLMHPLGALITGGI 286
            +N+++A    TL      A+L G+     A +G +AGLVAV   +  + P+G+++ G +
Sbjct: 292 FINTILATGAATLSWIGAEAVLKGKASMLGAASGAVAGLVAVTPAAGFVGPMGSIVLGLL 351

Query: 287 AGAIFVWMFTRTQNKWKIDDVLGVWPLHGLCGLWGGLAAGIFGLQALGGRGGVSF----- 341
           AG I +W  +  +    +DD   V+ +HG+ G++G +  G+    +LGG G   +     
Sbjct: 352 AGMICLWGVSGLKRMLGVDDAFDVFGVHGVGGIFGAIMTGVLAAPSLGGTGAADYAMAHQ 411

Query: 342 -MAQLIGSLMGIAIAALGGWIVYGLLKKAVGIRLDPEQEFEGADLAIHKISS 392
            M Q+ G L+ I  + +  ++ Y L+   +G+R+  E E EG D++ H  S+
Sbjct: 412 LMVQVKGVLITIVWSGIVAFVAYKLVDMVIGLRVADEAEREGLDISSHGESA 463


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.142    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 739,427
Number of extensions: 29330
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 2
Length of query: 400
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 316
Effective length of database: 723,567
Effective search space: 228647172
Effective search space used: 228647172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)