BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0537.p (597 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [... 221 1e-58 gi|134096143|ref|YP_001101218.1| hypothetical protein HEAR2987 [... 206 2e-54 gi|134093904|ref|YP_001098979.1| GGDEF domain-containing protein... 206 3e-54 gi|134093880|ref|YP_001098955.1| putative signal peptide [Hermin... 199 3e-52 gi|134094611|ref|YP_001099686.1| hypothetical protein HEAR1387 [... 189 3e-49 >gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [Herminiimonas arsenicoxydans] Length = 859 Score = 221 bits (562), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 159/439 (36%), Positives = 233/439 (53%), Gaps = 22/439 (5%) Query: 165 RLEQLRNSGYTDHVTGLPNRARLMEVLRSRAQESGPVSR-SCAALAVDICPREYLFDMVK 223 R+E L + D +TGLPNRA L E RAQ + ++ A LAV ++ ++ Sbjct: 427 RIESL---AHFDVLTGLPNRALLDE----RAQRALRLAEEDQATLAVMFLDLDHFKNIND 479 Query: 224 ALGWDYAEAFLVEVCRTLQRALG-TTQVYRVATTTFVYLDDGDAQQRQQRQA-SLQRHFA 281 LG + + LVE+ + L+ L + R+ FV L G ++ ++ A L R Sbjct: 480 TLGHNLGDTLLVELAQRLRAVLRRDDTLSRLGGDEFVLLLPGANRESAKKIAQELMRAIN 539 Query: 282 HALEIHGIPHQLDIAVGVLPQVNELDGGDVVRALLTVIDVS----REEGVSP-RIF-EPA 335 I H+L++ + V DG D L DV+ ++EG + R F + Sbjct: 540 EPYRIGS--HELNVMASIGIAVYPADGMDF-ETLCKNADVAMYRAKQEGRNAYRSFTQEM 596 Query: 336 HAENQRYAFWVLSALPVAFNTPGELSLYYQPKVRLQDGACIGVEALIRWQHPILGNISPE 395 A + RY VL+AL A +L ++YQP++ L G IG EAL+RW HP LGNISP Sbjct: 597 QAYSTRY-LQVLNALRQAI-AQEQLHVHYQPQISLISGDVIGAEALLRWHHPELGNISPA 654 Query: 396 VFISLAEKTAQIRQITTWVVRQAVAQAAHWAQRG-RATPVAINTSARDFEADDLQCLLAQ 454 FI +AE++ I QI WV+R AVAQA W Q G +A+N SA F L L+ Q Sbjct: 655 EFIPIAEESGLILQIGEWVLRVAVAQAKKWHQLGLDKLIIAVNLSAVQFRHAGLPNLVMQ 714 Query: 455 LLMQHMVPPGLIEIEFTESAMASNPEVVRQRVQAIRELGVKVAIDDFGAGFSNLSYLKSI 514 +L + PP +E+E TE +P+ + ++ E GV+++IDDFG G+S+LSYLK Sbjct: 715 ILKEEDFPPQYLELELTEGVAMHDPQGAIAMMNSLHERGVRMSIDDFGTGYSSLSYLKQF 774 Query: 515 PADVMKIDRSFIRGLVDDEADQVIVPSIIHLAHQLGFGVVAEGVECERTVRLLQHLGCDY 574 A +KID+SF+R + D D+ IV +II +A LG +AEGVE L+ GC Sbjct: 775 KAYKLKIDQSFVRDISTDAEDKAIVSAIIGMAKNLGLQTIAEGVETAEQQAFLREEGCHE 834 Query: 575 AQGYAIARPMPAEELEEWM 593 AQGY ++P+PA + E ++ Sbjct: 835 AQGYHYSKPLPAADFETFI 853 >gi|134096143|ref|YP_001101218.1| hypothetical protein HEAR2987 [Herminiimonas arsenicoxydans] Length = 558 Score = 206 bits (524), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 145/444 (32%), Positives = 225/444 (50%), Gaps = 18/444 (4%) Query: 162 VMERLEQLRNSGYTDHVTGLPNRARLMEVLRSRAQESGPVSRSCAALAVDICPREYLFDM 221 V L L+ D VT LPNR L++ L + P S A + V + + ++ Sbjct: 117 VRSYLRHLKWIARHDPVTRLPNRHALLKALYDIQKIKSP-SHLHALVVVSL---QNTTEL 172 Query: 222 VKALGWDYAEAFLVEVCRTLQRAL-GTTQVYRVATTTF-VYLDDGDAQQRQQRQASLQRH 279 A G+D EA + + Q L VYR+ + ++ DAQ A+L + Sbjct: 173 KSAFGFDITEAVIQQSADRYQGILQDKAGVYRIDPEQLGILIESRDAQVIDILLAALVKS 232 Query: 280 FAHALEIHGIPHQLDIAVGVLP-----QVNELDGGDVVRALLTVIDVSRE-EGVSPRIFE 333 + + IP +D +G + Q EL AL + + +++ SP I Sbjct: 233 AQQPYQFNAIPIHVDSRLGYVTFSKVIQAPELYLQRAESALTSANEKAQDCVAYSPEISN 292 Query: 334 PAHAENQRYAFWVLSALPVAFNTPGELSLYYQPKVRLQDGACIGVEALIRWQHPILGNIS 393 A EN ++SAL G+LS++YQPK+ ++ G GVEAL+RW HP GNI Sbjct: 293 FAK-ENLSILGNLMSAL-----EEGQLSMHYQPKISIKTGEIHGVEALMRWNHPERGNIP 346 Query: 394 PEVFISLAEKTAQIRQITTWVVRQAVAQAAHWAQRGRATPVAINTSARDFEADDLQCLLA 453 P +FI AE++ I IT + + QA+ Q W + +A+N S R+ L+ Sbjct: 347 PGIFIPRAEQSTLINLITEFALEQAMKQIVEWRENDIHLAIAVNISPRNLLQPGFSDLVL 406 Query: 454 QLLMQHMVPPGLIEIEFTESAMASNPEVVRQRVQAIRELGVKVAIDDFGAGFSNLSYLKS 513 QLL ++ V +E+E TE A+ ++ + + + ++IDDFG G+S+L YL Sbjct: 407 QLLQRYDVSGQFLELEVTEGALMTDIAHSISELSRLANAKITISIDDFGTGYSSLQYLHQ 466 Query: 514 IPADVMKIDRSFIRGLVDDEADQVIVPSIIHLAHQLGFGVVAEGVECERTVRLLQHLGCD 573 +P ++KID+SF+R L DD+ IV + + LAH++G +AEGVE +R LL LGCD Sbjct: 467 LPISLIKIDQSFVRRLPDDKGAIHIVEAAVTLAHKMGMRTIAEGVENQRAYTLLADLGCD 526 Query: 574 YAQGYAIARPMPAEELEEWMGMSR 597 AQG+ I+RP+PA ELE+W+ + Sbjct: 527 IAQGFMISRPLPAAELEKWLAQYK 550 >gi|134093904|ref|YP_001098979.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 599 Score = 206 bits (524), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 152/477 (31%), Positives = 233/477 (48%), Gaps = 22/477 (4%) Query: 134 GTLCIIDSQARSH--FSQAEQAQLEQLAAIVMERLEQLRNSGYTDHVTGLPNRARLMEVL 191 G L I Q R + + +EQ +L ++ + E+ L + + D++TG+PNR E+ Sbjct: 128 GLLMIASRQRRLYNVLTASEQEKLNLISQLEQEKSRALLQASH-DYLTGVPNRRLFYEMA 186 Query: 192 RSRAQESGPVSRSCAALAVDICPREYLFDMVKALGWDYAEAFLVEVCRTLQRALGTTQVY 251 + + + A +D+ + + D LG + L V R L+ +L + Sbjct: 187 ATELARAKRSRKLYALFFLDLDKFKLIND---TLGHAVGDLLLQGVARRLRESLREYDLL 243 Query: 252 -RVATTTFVYL-----DDGDAQQRQQRQASLQRHFAHALEIHGIPHQLDIAVGVLPQVNE 305 R+ FV L + D + + + R L + I I + + P+ Sbjct: 244 ARLGGDEFVILVSEMASESDIARVAAKLVDVVRDPFLDLGGNDIDVSPSIGIALYPR--- 300 Query: 306 LDGGDV----VRALLTVIDVSREEGVSPRIFEPAHAENQRYAFWVLSALPVAFNTPGELS 361 DG DV + A L + + R F+ + + +LS A E Sbjct: 301 -DGQDVETLLMHADLAMYSAKSAGAATYRFFDTSLNASSARETELLSRFKRAIKDD-EFC 358 Query: 362 LYYQPKVRLQDGACIGVEALIRWQHPILGNISPEVFISLAEKTAQIRQITTWVVRQAVAQ 421 L+YQP+V LQ+ + +G+EALIRW HP G I P FISLAE I + WVV A Q Sbjct: 359 LHYQPRVELQNFSVLGLEALIRWNHPEHGLIYPNDFISLAENNDLIVPLGNWVVDAACRQ 418 Query: 422 AAHWAQRGR-ATPVAINTSARDFEADDLQCLLAQLLMQHMVPPGLIEIEFTESAMASNPE 480 A W +G PVAIN S+R + D L + L ++ + P ++EIE TES + + Sbjct: 419 LAVWRGQGLPIVPVAINVSSRQLKDDTLLETVMTTLAKYQIAPEMLEIEVTESCFIEDFD 478 Query: 481 VVRQRVQAIRELGVKVAIDDFGAGFSNLSYLKSIPADVMKIDRSFIRGLVDDEADQVIVP 540 Q ++ +++ G+K+A+DD+G GFS L LK +P +KIDRSFIR + +D +D VIV Sbjct: 479 AASQVLEQLQKNGIKIALDDYGTGFSGLKNLKILPIYAIKIDRSFIRDIRNDNSDAVIVA 538 Query: 541 SIIHLAHQLGFGVVAEGVECERTVRLLQHLGCDYAQGYAIARPMPAEELEEWMGMSR 597 S I LAH LG VVAEGVE + + L+ GCD QG+ RP+ A E++ + R Sbjct: 539 STISLAHNLGLQVVAEGVESKEQLVHLKTAGCDQVQGFYFQRPVAATEIDTLLQRGR 595 >gi|134093880|ref|YP_001098955.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 944 Score = 199 bits (506), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 148/424 (34%), Positives = 214/424 (50%), Gaps = 22/424 (5%) Query: 176 DHVTGLPNRARLMEVLRSRAQESGPVSRSCAALAVDICPREYLFDMVKALGWDYAEAFLV 235 D +TGL NR+ + + L + L VD+ +++ D LG + L Sbjct: 512 DALTGLANRSLMRDRLGQAVSYAHRYGHPIWILFVDLDRFKFVND---TLGHQAGDILLK 568 Query: 236 EVCRTLQRAL-GTTQVYRVATTTFVYL-----DDGDAQQRQQRQASLQRHFAHALEIHGI 289 V LQ A+ T V R+ FV + D G + QR + A L I G Sbjct: 569 AVSARLQAAVRDTDTVARMGGDEFVLILPERTDAGLSTGIMQR---IMESIAQPLTIEG- 624 Query: 290 PHQLDIAVGVLPQVNELDGGDVVRALLTVIDVS----REEGVSP-RIFEPAHAENQRYAF 344 H+ I+ + V DG + L+ D++ +E G + + + PA E Sbjct: 625 -HEFFISGSIGVAVYPADG-ETPEELIKHADIAMYRAKETGRNNFQFYTPAMNERALERL 682 Query: 345 WVLSALPVAFNTPGELSLYYQPKVRLQDGACIGVEALIRWQHPILGNISPEVFISLAEKT 404 + L A E +L+YQP+V L+ G +GVEALIRWQHP LG + P FI LAE+ Sbjct: 683 HIEGDLRNALERE-EFTLHYQPQVDLRSGQIVGVEALIRWQHPELGMVPPVRFIGLAEEN 741 Query: 405 AQIRQITTWVVRQAVAQAAHWAQRGRA-TPVAINTSARDFEADDLQCLLAQLLMQHMVPP 463 I I WV+R A Q W + G +++N SAR F +DL +A L + + P Sbjct: 742 GLIVPIGAWVIRTACLQNKVWQESGFGHLRMSVNLSARQFAQEDLVDSIAVSLREANLAP 801 Query: 464 GLIEIEFTESAMASNPEVVRQRVQAIRELGVKVAIDDFGAGFSNLSYLKSIPADVMKIDR 523 +EIE TES + ++ + ++ ++ LGV+++IDDFG G+S+LSYLK P DV+KIDR Sbjct: 802 EYLEIELTESLVMADVDRAIGILRELKALGVQLSIDDFGTGYSSLSYLKRFPIDVLKIDR 861 Query: 524 SFIRGLVDDEADQVIVPSIIHLAHQLGFGVVAEGVECERTVRLLQHLGCDYAQGYAIARP 583 SF+ + D D IV S+I LAH L V+AEGVE E + L+ CD QGY +RP Sbjct: 862 SFVNDITIDPDDAAIVASVISLAHSLRLDVIAEGVETEEQLTYLREHNCDQIQGYFFSRP 921 Query: 584 MPAE 587 + AE Sbjct: 922 VTAE 925 >gi|134094611|ref|YP_001099686.1| hypothetical protein HEAR1387 [Herminiimonas arsenicoxydans] Length = 832 Score = 189 bits (480), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 126/430 (29%), Positives = 214/430 (49%), Gaps = 12/430 (2%) Query: 168 QLRNSGYTDHVTGLPNRARLMEVLRSRAQESGPVSRSCAALAVDICPREYLFDMVKALGW 227 Q+ D +T LPNR L+ L + + S + ++L + C ++ + G Sbjct: 396 QIEYQAMHDMLTDLPNRRYLVNTLATAMETS---RQQQSSLTMLFCDLDFFKSVNDTHGH 452 Query: 228 DYAEAFLVEVCRTLQRALGTTQ-VYRVATTTFVYLDDGDAQQRQQRQASLQRHFAHALEI 286 D+ + L+E+ + + L + V R FV L + + + ++ R + L Sbjct: 453 DFGDQCLLEISKRIVAVLPESDFVARFGGNEFVILTNSSLAESSIKAKAIARAVSERLVF 512 Query: 287 HGIPHQLDIAVGV--LPQVNELDGGDVVRALLTVIDVSREEGVS-PRIFEPAHAENQRYA 343 + ++ +++G+ L +++ D++R + ++E G + I++ A Sbjct: 513 ENVAVKIQVSIGIAQLSPDHQVPA-DLIREADAAMYQAKERGRNRTEIYDAALQSKSTKH 571 Query: 344 FWVLSALPVAFNTPGELSLYYQPKVRLQDGACIGVEALIRWQHPILGNISPEVFISLAEK 403 + AL A ELS+ YQPKV L DG+ G E L+RW P G ISP FI +AE Sbjct: 572 ARMDVALRFALER-NELSVAYQPKVSLVDGSVRGFELLLRWNSPEYGMISPNEFIPIAET 630 Query: 404 TAQIRQITTWVVRQAVAQAAHWAQRGRAT---PVAINTSARDFEADDLQCLLAQLLMQHM 460 + + I W + QA Q A W A VA+N S R + ++L Sbjct: 631 SGMVVPIGMWAMEQACRQLAAWQASYPAMGDITVAVNVSMRQLLHTSFFTQVREILDSSG 690 Query: 461 VPPGLIEIEFTESAMASNPEVVRQRVQAIRELGVKVAIDDFGAGFSNLSYLKSIPADVMK 520 V P IE+E TE++ +NP + + ++ LG+++A+DDFG G+S+L+YL+ +P D++K Sbjct: 691 VVPHTIELELTETSAMANPLQTIENLALLKNLGLRLALDDFGTGYSSLAYLQKLPIDILK 750 Query: 521 IDRSFIRGLVDDEADQVIVPSIIHLAHQLGFGVVAEGVECERTVRLLQHLGCDYAQGYAI 580 ID++F+ GL ++D+ I+ ++ LA L VAEGVE + LQ +GCD QG+ Sbjct: 751 IDKTFVHGLGTKQSDREIIRLMMALAQTLNLQTVAEGVETIMHINELQEMGCDLGQGFIF 810 Query: 581 ARPMPAEELE 590 + P+ AEE E Sbjct: 811 SPPLSAEEAE 820 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,066,613 Number of extensions: 41767 Number of successful extensions: 142 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 15 Length of query: 597 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 510 Effective length of database: 713,682 Effective search space: 363977820 Effective search space used: 363977820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)