BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0536.p (522 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 374 e-105 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 337 8e-94 gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis pro... 337 9e-94 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 334 6e-93 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 324 8e-90 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 374 bits (961), Expect = e-105, Method: Compositional matrix adjust. Identities = 249/533 (46%), Positives = 340/533 (63%), Gaps = 32/533 (6%) Query: 4 WAEMRIGMKLSLGFASLLLMTLALVAVAILGINSLRSSIERANDVQNEKLEPLYAAREA- 62 + M +G KL +S L +++A VA +GI ++ ++A D+ N++L L ++A Sbjct: 2 FKNMTVGTKL---ISSFLTLSVAGAIVAGIGIYNMGKINDKAGDIYNQELMGLSYIKDAN 58 Query: 63 LDQTGIAARNAYVFLEDVDARKELKIVDEQKAIYLAELQKLEPLLADNPNFSAVRGGLLQ 122 +D I V L + + L + +K YLA + E L P F + L Sbjct: 59 IDLLFIGRARGNVLLSTTEEERTLNKENIKK--YLASAK--ENLAKAQPLFVSDSAKAL- 113 Query: 123 MADELRLPRQYRQSGAMEAYRDFLVNRCSPLRRKIVE-------------DINQLIAEIA 169 A + + Y + E +R + PL+++ E ++ ++ E++ Sbjct: 114 FAKYATVSQDYEK----EMWRALALADKEPLQQRSAELTTSMAQTRLHANTLDNVLTELS 169 Query: 170 GQSKGAGAASESAAKDALH-----LISLLAVVVTLLAVTVAFIITRGLLRQLGGEPAYAM 224 Q K AA + L+ + LL ++ + + +ITR L QLGGEP YA Sbjct: 170 KQ-KEVRAAQAHVETEQLYDSSRAFMVLLVILSAFSGILLGVLITRNLKGQLGGEPNYAA 228 Query: 225 AIAQQIAHGDLAVEVSTRADDRSSLLYAIRMMRDSLAAIVGQVRQGTDSIERASTEIASG 284 +A +IA GDL V + R+ D++S+L+A+R MRDSLA+IV QVR GTD+I AS +IA+G Sbjct: 229 GVAARIAAGDLTVAIDLRSKDQTSMLFAMREMRDSLASIVSQVRSGTDTITTASGQIAAG 288 Query: 285 NVDLSARTERQASSLEETASAMEEITSAVRHNAENAAQASELAESASVIAVKGGQLMGEV 344 N+DLS+RTE QAS+LEETAS+MEEITS V+ NAEN+ QAS LA AS A++GG ++ +V Sbjct: 289 NLDLSSRTEEQASALEETASSMEEITSTVKQNAENSQQASTLAVHASSTAIRGGAVVSQV 348 Query: 345 VATMDDINQSSIKVVDIISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLA 404 V TM I +SS K+VDII VIDGIAFQTNILALNAAVEAARAGE GRGFAVVASEVR+LA Sbjct: 349 VDTMGSITESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA 408 Query: 405 QRSAAAAKEIKELISASVTKVEAGSSLVKGAGVTMEEIVASVRKVTGVIADITVSSREQS 464 QRSA+AAKEIK+LI SV KV+AGS LV+ AG TM+EIV +++V +++DIT + REQS Sbjct: 409 QRSASAAKEIKQLIGDSVEKVDAGSKLVEQAGTTMKEIVGGIQRVADIMSDITAAGREQS 468 Query: 465 AGIEQVNDAITHMDEATQQNSALVEQAAAAAQALTSQAGSLARLVSTFKVAPT 517 AGIEQVN AI MDE TQQN+ALVE+AAAA+Q+L QA L+ +VS FK+ T Sbjct: 469 AGIEQVNQAIAQMDEVTQQNAALVEEAAAASQSLQDQATHLSEIVSVFKLDNT 521 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 337 bits (864), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 208/394 (52%), Positives = 275/394 (69%), Gaps = 12/394 (3%) Query: 135 QSGAMEAYRDFLVNRCSPLRRKIVEDINQLIAEIAGQSKGAGAASESAAKDALHLISLLA 194 ++G E D LVN+ PL + + + ++L+ E+ +S G ++ H ++A Sbjct: 138 RAGRNEEVEDILVNKMPPLFQSLTKSTDELV-ELQMKSAATGYQD---SQTLFHYFRIIA 193 Query: 195 VVVTLLAVTVAFIITRGLLRQLGGEPAYAMAIAQQIAHGDLA--VEVSTRADDRSSLLYA 252 VV LL + I L+R + G + IA GDL +EV +R ++ +L+ Sbjct: 194 VVGVLLGLIGVAIYAFFLIRAITGPLKEMLLHFDTIASGDLTSNIEVKSR-NEMGTLMLG 252 Query: 253 IRMMRDSLAAIVGQVRQGTDSIERASTEIASGNVDLSARTERQASSLEETASAMEEITSA 312 ++ M+ L V QVR+G+ +I A+TEIA+GN+DLS+RTE+QA+SLEETAS+MEE+TS Sbjct: 253 LQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAASLEETASSMEELTST 312 Query: 313 VRHNAENAAQASELAESASVIAVKGGQLMGEVVATMDDINQSSIKVVDIISVIDGIAFQT 372 V+ N +NA QA++LA SAS +AVKGG ++ +VV TMD IN S+ K+VDII VIDGIAFQT Sbjct: 313 VKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARKIVDIIGVIDGIAFQT 372 Query: 373 NILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELISASVTKVEAGSSLV 432 NILALNAAVEAARAGE GRGFAVVASEVR+LAQRSAAAAKEIK LI SV KV+AG+ LV Sbjct: 373 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHLIDDSVNKVDAGTRLV 432 Query: 433 KGAGVTMEEIVASVRKVTGVIADITVSSREQSAGIEQVNDAITHMDEATQQNSALVEQAA 492 AG TM E+V SV++VT ++++I +S+EQSAGIEQVN AI MDE TQQN+ALVEQAA Sbjct: 433 AEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQMDEVTQQNAALVEQAA 492 Query: 493 AAAQALTSQAGSLARLVSTFKV-----APTAAVP 521 AAA +L QA +L+ +VS FK+ AP VP Sbjct: 493 AAASSLRDQATNLSTVVSVFKLQGHQSAPQNLVP 526 >gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 538 Score = 337 bits (864), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 243/532 (45%), Positives = 331/532 (62%), Gaps = 43/532 (8%) Query: 7 MRIGMKLSLGFASLLLMTLALVAVAILGINSLRSSIERANDVQNEKLEPLYAARE-ALDQ 65 M I +K LG + L+ L +AV +LG+N + S N L+ +Y R AL++ Sbjct: 1 MNITLKTRLGLV-IGLLALISMAVGLLGLNGIGRS--------NGDLQQVYQHRTVALEK 51 Query: 66 TG-------IAARNAYVFLEDVDARKELK----IVDEQKAIYLAELQKLE-PLLADN--- 110 L D DA K I I A + ++ LL D Sbjct: 52 ISRIDRLLLANRLALSEALHDPDAEKTASHTALIAKNAAEITQAWNEYMDGSLLPDERRL 111 Query: 111 -PNFSAVRGGLLQMADELRLPRQYRQSG----AMEAYRDFLVNRCSPLRRKIVEDINQLI 165 NF++ R ++Q D L Q G AM+ + F + P R ++ + +L Sbjct: 112 AENFASHRARMVQ--DGLFPAAAALQKGQVVEAMQLQQQF--QKLVPAVRNSIDALRKL- 166 Query: 166 AEIAGQSKGAGAASESAAKDALHLISLLAVVV---TLLAVTVAFIITRGLLRQLGGEPAY 222 Q AG A E+A + L + +++A V+ + A + F++ R + QLGGEP Y Sbjct: 167 -----QVDEAGLAYEAAQQRYLTIRNVIATVLGAGAVAATLLGFLLVRSVYAQLGGEPQY 221 Query: 223 AMAIAQQIAHGDLAVEVSTRADDRSSLLYAIRMMRDSLAAIVGQVRQGTDSIERASTEIA 282 A I ++IA GDL+ + TR DR+SLL A++ M+ +LA VG +R+ +D+I AS +IA Sbjct: 222 AAQIVRRIAGGDLSATIITRKGDRNSLLAAMQDMQQNLAKTVGDIRRASDTIATASGQIA 281 Query: 283 SGNVDLSARTERQASSLEETASAMEEITSAVRHNAENAAQASELAESASVIAVKGGQLMG 342 +GN+DLSARTE+QASSLEETAS+MEE+T+ V+ NA +A QA++LA SAS IAV+G ++ Sbjct: 282 AGNIDLSARTEQQASSLEETASSMEELTATVKQNAGHAQQANQLAVSASDIAVQGNTVVA 341 Query: 343 EVVATMDDINQSSIKVVDIISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRT 402 +VV TMD I+ S+ ++ DII VI+GIAFQTNILALNAAVEAAR GE GRGFAVVA+EVR+ Sbjct: 342 QVVTTMDSISASAGRIGDIIGVINGIAFQTNILALNAAVEAARVGEQGRGFAVVATEVRS 401 Query: 403 LAQRSAAAAKEIKELISASVTKVEAGSSLVKGAGVTMEEIVASVRKVTGVIADITVSSRE 462 LAQRSA AAKEIK LI S+ KV AG++LV AG TM EIVAS+ +VT ++ +IT +SRE Sbjct: 402 LAQRSAEAAKEIKSLIDDSLEKVGAGATLVDQAGSTMNEIVASIGQVTDIMGEITTASRE 461 Query: 463 QSAGIEQVNDAITHMDEATQQNSALVEQAAAAAQALTSQAGSLARLVSTFKV 514 Q+AGIEQVN AI MD TQQN+ALVE+AAAAA +L QA SL ++VS FK+ Sbjct: 462 QTAGIEQVNQAIGQMDRVTQQNAALVEEAAAAAGSLQEQACSLVQVVSVFKL 513 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 334 bits (857), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 213/435 (48%), Positives = 286/435 (65%), Gaps = 33/435 (7%) Query: 81 DARKELKIVDEQKAIYLAELQKLEPLLADNPNFSAVRGGLLQMADELRLPRQYRQSGAME 140 + +K L V E++A Y A + D N RG LQ A Sbjct: 109 EGKKLLATVAEKRATYTA-------IRDDVMNLREARGAELQNA---------------- 145 Query: 141 AYRDFLVNRCSPLRRKIVEDINQLIAEIAGQSKGAGAASESAAKDALHLISLLAVVVTLL 200 + N+ P ++ + ++ + A ++ + A L+ +L +V L Sbjct: 146 -----IANKMKPAADAYIQSVEAVVNAQINNFEDAKGRVDTIYQSARMLLIVLGLVALTL 200 Query: 201 AVTVAFIITRGLLRQLGGEPAYAMAIAQQIAHGDLAVEVSTRADDRS-SLLYAIRMMRDS 259 + +A+++TR + + L YA+++A+ +A GDL ++ + D + LL A++ M DS Sbjct: 201 GIVLAWMLTRSITKPLD----YAVSVARLVASGDLTGRITVDSKDETGQLLQALKDMNDS 256 Query: 260 LAAIVGQVRQGTDSIERASTEIASGNVDLSARTERQASSLEETASAMEEITSAVRHNAEN 319 L A + QVR G D+I AS +IASGN+DLS+RTE QASSLEETAS+MEE+TS V+ NA+N Sbjct: 257 LTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADN 316 Query: 320 AAQASELAESASVIAVKGGQLMGEVVATMDDINQSSIKVVDIISVIDGIAFQTNILALNA 379 A QA++LA +AS +A KGG ++ +VV TMD IN S+ K+VDII VIDGIAFQTNILALNA Sbjct: 317 ARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIVDIIGVIDGIAFQTNILALNA 376 Query: 380 AVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELISASVTKVEAGSSLVKGAGVTM 439 AVEAARAGE GRGFAVVASEVR+LAQRSAAAAKEIK LI SV KV+ GS LV AG TM Sbjct: 377 AVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDSVDKVDTGSKLVAEAGTTM 436 Query: 440 EEIVASVRKVTGVIADITVSSREQSAGIEQVNDAITHMDEATQQNSALVEQAAAAAQALT 499 E+V SV++VT ++A+I +S+EQSAGIEQVN AI MD+ TQQN+ALVE+AAAAA++L Sbjct: 437 VEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLN 496 Query: 500 SQAGSLARLVSTFKV 514 QA +LA+ VS FK+ Sbjct: 497 EQAANLAQAVSIFKL 511 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 324 bits (830), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 194/313 (61%), Positives = 242/313 (77%), Gaps = 7/313 (2%) Query: 209 TRGLLRQLGGEPAYAMAIAQQIAHGDLA--VEVSTRADDRSSLLYAIRMMRDSLAAIVGQ 266 +R + R L YA+ +A+ +A GDL +EV++ +D+ LL A+R M D L V + Sbjct: 213 SRSITRPL----EYAVEVARTVAGGDLRNRIEVNS-SDETGQLLQALRDMNDGLVKSVSE 267 Query: 267 VRQGTDSIERASTEIASGNVDLSARTERQASSLEETASAMEEITSAVRHNAENAAQASEL 326 VR G ++I AS +IA+GN+DLS+RTE QASSLEETAS+MEE+TS V+ NA+NA QA++L Sbjct: 268 VRTGIETIATASNQIAAGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQL 327 Query: 327 AESASVIAVKGGQLMGEVVATMDDINQSSIKVVDIISVIDGIAFQTNILALNAAVEAARA 386 A SAS +A KGG ++ +VV TM+DIN S+ K+VDII VIDGIAFQTNILALNAAVEAARA Sbjct: 328 AVSASGVAEKGGVVVSQVVDTMEDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARA 387 Query: 387 GEGGRGFAVVASEVRTLAQRSAAAAKEIKELISASVTKVEAGSSLVKGAGVTMEEIVASV 446 GE GRGFAVVASEVR LAQRSAAAAKEIK LI SV KV+ GS LV AGVTMEE+V SV Sbjct: 388 GEQGRGFAVVASEVRNLAQRSAAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSV 447 Query: 447 RKVTGVIADITVSSREQSAGIEQVNDAITHMDEATQQNSALVEQAAAAAQALTSQAGSLA 506 ++VT ++++I +S+EQSAGIEQVN AI MD+ TQQN+ALVE+AAAAA++L QAG LA Sbjct: 448 KRVTDIMSEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLA 507 Query: 507 RLVSTFKVAPTAA 519 VS FK+ AA Sbjct: 508 EAVSVFKLDGVAA 520 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.127 0.325 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 610,692 Number of extensions: 19170 Number of successful extensions: 175 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 143 Number of HSP's successfully gapped: 15 Length of query: 522 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 436 Effective length of database: 716,977 Effective search space: 312601972 Effective search space used: 312601972 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)