BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0525.p
         (319 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094414|ref|YP_001099489.1| putative Beta lactamase,soxH-li...   110   1e-25

>gi|134094414|ref|YP_001099489.1| putative Beta lactamase,soxH-like
           protein [Herminiimonas arsenicoxydans]
          Length = 323

 Score =  110 bits (274), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 122/263 (46%), Gaps = 16/263 (6%)

Query: 14  KKITFERISENAYAYTAEGDP------------NSGVIIGDDGVMVIDTTATPAMAQDLI 61
            +IT   I  + + Y  EGD             N+G ++ D GV+V D  ATPA+AQ ++
Sbjct: 26  NEITLNPIKVSPHVYFFEGDSGMASVANKGFMSNAGFVVTDAGVVVFDALATPALAQAMV 85

Query: 62  DRIRSVTDLPIKYVVLTHYHAVRVLGASAYFKEGGEQVIASRGTYEMIVERGEADMKS-E 120
             I+ VT  PI+ V+++HYHA    G     ++G E      G   +  +  +A +K   
Sbjct: 86  KAIKKVTSQPIRRVIISHYHADHFYGLQILKEKGAEIWAHENGRAALASDDAKARLKQRR 145

Query: 121 IERFPRLFAGVETVPGLTWPTMVFEKEMTIFMGKLEVKIAHLGAGHTKGDTVVWLPGQKV 180
            +  P + +    +P   W      K +   MG L  ++      H+  D ++++   KV
Sbjct: 146 ADLAPWVNSKTRLIPADKWLNFTDAKTIAFEMGGLHFRVIDSSGAHSPEDIMLFVDEDKV 205

Query: 181 LFSGDLVEYDAACYCGDAQLEQWPGTLDALSALQPEALVPGRGPALRGPQEVAQGIAYTK 240
           LF+GDL       + G A  ++W   LD + A++PE ++PG G   R   E  + +  T+
Sbjct: 206 LFAGDLFFTGRIPFVGSADSKRWLEALDRMLAVKPEFVIPGHG---RMSTEPTKDMQLTR 262

Query: 241 DFVSTLLRAGREAVAAKMGLKEA 263
           +++  L +   EAVA      EA
Sbjct: 263 EYLIFLRKKMGEAVADMKPFDEA 285


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 625,934
Number of extensions: 26187
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 237
Effective length of database: 730,157
Effective search space: 173047209
Effective search space used: 173047209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)