BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0520.p
         (581 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094843|ref|YP_001099918.1| putative transmembrane ABC tran...   440   e-124

>gi|134094843|ref|YP_001099918.1| putative transmembrane ABC
           transporter protein [Herminiimonas arsenicoxydans]
          Length = 577

 Score =  440 bits (1131), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 252/527 (47%), Positives = 343/527 (65%), Gaps = 11/527 (2%)

Query: 55  VDSSPAMIPYYAGRTLLRMWIAFAFSLFFAIGTGYLAAKNRRARALILPALDILQSVPVL 114
           +   PA +PYY  RT+LRM++A  FSL F+     +AAK R A  +++P LDILQSVP+L
Sbjct: 56  ISLDPAYLPYYLLRTILRMFMALGFSLLFSFVFAAIAAKYRAAEKIMIPMLDILQSVPIL 115

Query: 115 GFLSATVTGFMALFPGSLMGVECAAIFAIFTGQVWNMAFGFYHSMVTIPTDMQEAATTYR 174
           GF +  +  F+A FPG+L+GVECAAIFAIFT Q WNMAF  Y S+ T+P+++ EAA  +R
Sbjct: 116 GFQAIAIAPFIAFFPGNLLGVECAAIFAIFTSQAWNMAFSLYQSIRTVPSELNEAARVFR 175

Query: 175 LTAWQRFRTVELPASAHSLIWNSMMSFGGGWFFVAQSEAISVMNKDLKLPGLGSYMAQAI 234
           L+ WQRF  +ELP +   L+WN MMS  GGWFF+  +EAISV  +D+KLPG+G+Y+A AI
Sbjct: 176 LSGWQRFWRMELPYAMPGLLWNMMMSMSGGWFFLVAAEAISVAGQDIKLPGIGAYIAVAI 235

Query: 235 DKGDHTAALWAVIAMLALILISDQLVWRPLLAWADKFKIELTESTSPPTSWVYDLLRGSY 294
           +  D  A LWA+ AMLA I++ DQL +RPLLAWADKF+ E ++  +   SW+ D  R S 
Sbjct: 236 EARDLHAILWAIGAMLAGIVLYDQLFFRPLLAWADKFRFEESQGDTAQRSWLLDWGRRSR 295

Query: 295 VFTWLDEKLWTPLGN---WLARHRPATAGNLTPARVARRRWTNRLISGLIFGLLIFESLR 351
                  ++W+ L     W +     T+   T AR     W  R+  GL+    +F SL 
Sbjct: 296 WMRAFSARVWSLLRRTLGWFSLRHDGTSPQ-TSARTIHPWWP-RIWDGLV----LFASLL 349

Query: 352 GLVAAIDALHGAMSWSLFGHIVWLGFLTLLRVLAMTVIATLIWTPVGVWIGSKPHIARFA 411
            +      +H  +  +   H+V LGF+TLLRVL +  +A+LIW P+ VWIG +P  ++  
Sbjct: 350 AVFRLALFIHSDIGLTEILHVVKLGFITLLRVLLLIGLASLIWVPIAVWIGLRPKYSQCV 409

Query: 412 QPLAQIGASFPVNMTFPLVVGWFVAGNVSMN-WGSILLIAMGTQWYILFNVIAGAMAIPN 470
           Q  AQ  A+FPVN+ FPLVV   V+  ++ + W S L++  GTQWYILFNV+AGA  IPN
Sbjct: 410 QGAAQFLAAFPVNLMFPLVVYLLVSMQLNPDIWLSPLMV-FGTQWYILFNVVAGAATIPN 468

Query: 471 DLKEAARMYGLSRWNLWKTLILPAIFPFWVTGACTAAGGAWNASIVAELANWGDVSLKAD 530
           +L+ A+   GL  W  WK + LPA+FP ++TGA TA+GG+WNASIVAE   WG  +L AD
Sbjct: 469 ELRLASDNLGLKGWLKWKRVYLPAVFPSYITGAITASGGSWNASIVAEYVTWGKTTLIAD 528

Query: 531 GLGAYISAVTKSGDTPLIIASIGVMSMFVVMMNKFVWRRLYAFAERR 577
           GLG+YI  +T  GD   I   IGVM +FV+++N+F WR+LY  AE R
Sbjct: 529 GLGSYIKQMTDIGDFHRIGLGIGVMCIFVMLLNRFFWRKLYLLAEDR 575


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.327    0.138    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,193,861
Number of extensions: 50635
Number of successful extensions: 224
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 3
Length of query: 581
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 494
Effective length of database: 713,682
Effective search space: 352558908
Effective search space used: 352558908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)