BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0519.p (445 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding pro... 268 5e-73 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 155 4e-39 gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 147 7e-37 gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting A... 136 2e-33 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 123 2e-29 >gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 434 Score = 268 bits (684), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 166/447 (37%), Positives = 248/447 (55%), Gaps = 43/447 (9%) Query: 12 ELCAVSKSYNTAGGHELKVLDNIDLAVHEGELLALLGQSGSGKSTILRCLTGLVEPSSGH 71 EL V+KS+ TA G VL+N++ A+ EGE++ALLG+SGSGKST+LR + GL+ G Sbjct: 8 ELKGVAKSFKTADGTPCSVLENVNFALAEGEIVALLGKSGSGKSTLLRIMAGLIAADQGT 67 Query: 72 TMAAGKQLYGVNRDASVVFQTFALYPWLTVEQNVAVGLMSHNPTREERDAAVDRAIELIG 131 G+++Y ++VFQ+FAL+PWLTV+QNV +GL + +ER+ D ++LIG Sbjct: 68 AKYRGQEIYSPVSGIAMVFQSFALFPWLTVQQNVELGLEAQGMAPDEREKRADAMLDLIG 127 Query: 132 LGNYHSAYPRELSGGMRQRVGIARALVSKPKLLCLDEAFSALDVLTAENLRQELISLW-- 189 L + A PRELSGGM+QRVGIAR LV+ P +L +DEAFSALDVLT E LR +++ +W Sbjct: 128 LAGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILEMWEE 187 Query: 190 -RAPDSGLTSIFMVTHNIEEAVEMATRIVVVFPRPGRLGLVLDNPLPYPRDSKSPEFQRL 248 R P G I +V+HNIEEAV MA RI+V+ PGR+ + LP PR+ S E + L Sbjct: 188 KRIPTKG---ILIVSHNIEEAVMMADRILVLSSSPGRIRSEIRINLPRPRNVDSVEIRAL 244 Query: 249 VNIIHEAITTLSLPDLPPEA---HVPGEPISRGRKRMESIPLIPVGQILGLMSLL----- 300 ++ ++ +T + P+ HVP +P V I G++ LL Sbjct: 245 IDEVYALMTMRTQPETTAGGITLHVPSS---------HRLPETDVTHIEGVLDLLAGPPF 295 Query: 301 ---HDEPELNNIYDISDEIGKEFGETIATVKAAEILELVDTPKQEVYLTDLGRRFVAADR 357 D P+L + DE E T +A +L L K ++ LT LG R+ A Sbjct: 296 NGRADLPQLAEESKLPDE------ELFPTYEALGLLGLAQVEKGDITLTALGHRYAQAAN 349 Query: 358 KGQRAIFAEQVYKLRIFHIILA--VLGEAEE-----IEAERVLKDIGSALPYDNPEKTFE 410 ++ IF +Q+ + H+ LA + E+ + +R L + L D ++ E Sbjct: 350 MLRKEIFGQQL----LMHVPLAKQIRQSLEQEPSGTLSEKRFLDLLEEFLKDDEAKRVLE 405 Query: 411 TMIAWGRYAGLMDYNAKTGMVFVPKDE 437 ++ WGRY + +Y+ TG + +P+ + Sbjct: 406 VVVEWGRYGEVFEYDYHTGRLKLPESD 432 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 155 bits (392), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 100/246 (40%), Positives = 139/246 (56%), Gaps = 16/246 (6%) Query: 30 VLDNIDLAVHEGELLALLGQSGSGKSTILRCLTGLVEPSSGHTMAAGKQLYGV---NRDA 86 V+DNI L++ GE LLG SG GK+T+LR + G EP +G + G L GV R Sbjct: 18 VVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILLDGVDLTGVPPEQRVV 77 Query: 87 SVVFQTFALYPWLTVEQNVAVGLMSHNPTREERDAAVDRAIELIGLGNYHSAYPRELSGG 146 VFQ +AL+P +TV N+A L N + E VD A+E + L + + YP ELSGG Sbjct: 78 RTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEALEDVRLTGFAARYPHELSGG 137 Query: 147 MRQRVGIARALVSKPKLLCLDEAFSALDVLTAENLRQELISLWRAPDSGLTSIFMVTHNI 206 RQRV IARALV++PKLL LDE SALD E ++ ELI+L + + G+T ++ VTH+ Sbjct: 138 QRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQK--EVGITFVY-VTHDQ 194 Query: 207 EEAVEMATRIVVVFPRPGRLGLVLDNP---LPYPRDSKSPEFQRLVNIIHEAITTLS--- 260 EA+ ++ RI V+ G + LD P YPR +F N+ +T ++ Sbjct: 195 AEALALSHRIAVM--NKGNIEQ-LDEPTRIYSYPRSRFVADFIGTCNLFDGTVTQIAGDT 251 Query: 261 -LPDLP 265 L D+P Sbjct: 252 MLLDVP 257 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 147 bits (372), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 135/225 (60%), Gaps = 8/225 (3%) Query: 19 SYNTAGGHELKVLDNIDLAVHEGELLALLGQSGSGKSTILRCLTGLVEPSSGHTMAAGKQ 78 S++T G L +I+L V +GE + L+G SG GKST+L + GL + + G + ++ Sbjct: 17 SFHTKKG-VFNALTDINLTVAKGEFITLIGHSGCGKSTLLNLIAGLTQSTGGMLLCGNRE 75 Query: 79 LYGVNRDASVVFQTFALYPWLTVEQNVAVGL---MSHNPTREERDAAVDRAIELIGLGNY 135 + G + + +VVFQ +L PWLT +NV + + + + A A+ L+GL + Sbjct: 76 IAGPSPERAVVFQNHSLLPWLTCYENVYLAVERVFGKVEGKAKLRARTRAALSLVGLTHA 135 Query: 136 HSAYPRELSGGMRQRVGIARALVSKPKLLCLDEAFSALDVLTAENLRQELISLWRAPDSG 195 P E+SGGM+QRVGIARAL +PK+L +DE F ALD LT +L+ EL+ + A S Sbjct: 136 EQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELLKIVAATGS- 194 Query: 196 LTSIFMVTHNIEEAVEMATRIVVVFPRP-GRLGLVLDNPLPYPRD 239 ++ MVTH+++EAV ++ +IV++ P +G +L+ L +PR+ Sbjct: 195 --TVVMVTHDVDEAVLLSDKIVMLTNGPSATIGEILEVKLAHPRE 237 >gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting ATPase [Herminiimonas arsenicoxydans] Length = 262 Score = 136 bits (343), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 81/215 (37%), Positives = 122/215 (56%), Gaps = 8/215 (3%) Query: 15 AVSKSYNTAGGHELKVLDNIDLAVHEGELLALLGQSGSGKSTILRCLTGLVEPSSGHTMA 74 V+ Y T H + +D V++ + LLG SG GKST+L+ + G + P+ G Sbjct: 13 GVTLQYKTKE-HLVTATYRVDFKVYKSDRFVLLGPSGCGKSTLLKAVGGYMMPTEGEMRL 71 Query: 75 AGKQLYGVNRDASVVFQTF-ALYPWLTVEQNVAVGLMSHNPTR--EERDAAVDRAIELIG 131 K + D +VFQ F L PW TV+QNV L++ + E D A+ IE + Sbjct: 72 HDKVITKPWYDRMMVFQEFDQLPPWKTVKQNVMFPLLASGKLKGKEAEDKAM-YYIEKVN 130 Query: 132 LGNYHSAYPRELSGGMRQRVGIARALVSKPKLLCLDEAFSALDVLTAENLRQELISLWRA 191 L + YP LSGGM+QRV IAR + +P +L +DE ++ALD LT + ++ EL+ LW Sbjct: 131 LSKFADHYPHMLSGGMKQRVAIARGMAMEPDILLMDEPYAALDALTRKKMQDELLQLWD- 189 Query: 192 PDSGLTSIFMVTHNIEEAVEMATRIVVVFPRPGRL 226 D+ T +F VTH+I EAV++ RI+++ P PG++ Sbjct: 190 -DTHFTVLF-VTHSIAEAVKIGNRILLLSPHPGQV 222 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 123 bits (309), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/209 (38%), Positives = 119/209 (56%), Gaps = 11/209 (5%) Query: 18 KSYNTAGGHELKVLDNIDLAVHEGELLALLGQSGSGKSTILRCLTGLVEPSSGHTMAAGK 77 K+ N G+ L+++ L GEL ALLG SG GK+T+LR + GL +P G + G+ Sbjct: 6 KNINKKFGN-FVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLDGE 64 Query: 78 QLYGVN---RDASVVFQTFALYPWLTVEQNVAVGL----MSHNPTREERDAAVDRAIELI 130 + R VFQ +AL+ +TV +N+A GL + P+ V + +EL+ Sbjct: 65 DASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTKLLELV 124 Query: 131 GLGNYHSAYPRELSGGMRQRVGIARALVSKPKLLCLDEAFSALDVLTAENLRQELISLWR 190 L YP +LSGG RQR+ +ARAL +P++L LDE F ALD + LR+ L L Sbjct: 125 QLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLH- 183 Query: 191 APDSGLTSIFMVTHNIEEAVEMATRIVVV 219 + +TSIF VTH+ EEA+E+A +IV++ Sbjct: 184 -DELHVTSIF-VTHDQEEALEVADQIVLM 210 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 858,928 Number of extensions: 36206 Number of successful extensions: 254 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 192 Number of HSP's successfully gapped: 46 Length of query: 445 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 360 Effective length of database: 720,272 Effective search space: 259297920 Effective search space used: 259297920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)