BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0518.p (547 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 337 6e-94 gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis pro... 327 9e-91 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 321 7e-89 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 310 2e-85 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 309 2e-85 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 337 bits (865), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 231/515 (44%), Positives = 320/515 (62%), Gaps = 40/515 (7%) Query: 24 ISALGFYGMSRVNDALTDITRVNNAEIKLASALRNA-----LSQRAIAIRNIALLEDEAS 78 ++ +G Y M ++ND DI N E+ S +++A RA ++ E+E + Sbjct: 25 VAGIGIYNMGKINDKAGDIY---NQELMGLSYIKDANIDLLFIGRARGNVLLSTTEEERT 81 Query: 79 MQVE---------AQTLARQEKLY-ADAYTALEKMFATEAGTTEREHKLLAQVKADENAT 128 + E + LA+ + L+ +D+ AL +AT + E+E Sbjct: 82 LNKENIKKYLASAKENLAKAQPLFVSDSAKALFAKYATVSQDYEKE-------------- 127 Query: 129 VPLMAKALQLG----LENKPAEAVKVLISEVRPKQQAWITSLTELSEFEDQLNDEAAVSA 184 M +AL L L+ + AE + +++ R LTELS+ ++ +A V Sbjct: 128 ---MWRALALADKEPLQQRSAE-LTTSMAQTRLHANTLDNVLTELSKQKEVRAAQAHVET 183 Query: 185 RSTYEWLRTLMLTSIALALLVGIVAAVTIARSILRQLGAEPSEAQSIAREIASGDLTATV 244 Y+ R M+ + L+ GI+ V I R++ QLG EP+ A +A IA+GDLT + Sbjct: 184 EQLYDSSRAFMVLLVILSAFSGILLGVLITRNLKGQLGGEPNYAAGVAARIAAGDLTVAI 243 Query: 245 RVRVGDGSSLMASIEQMRYQLNVIAYGIKSAAETISVASGQIAQGNFDLSQRTEEQAASL 304 +R D +S++ ++ +MR L I ++S +TI+ ASGQIA GN DLS RTEEQA++L Sbjct: 244 DLRSKDQTSMLFAMREMRDSLASIVSQVRSGTDTITTASGQIAAGNLDLSSRTEEQASAL 303 Query: 305 EETAASMEELTTTVRQNTEHAAEALRLSGGAAQTATSGSAAFDRVVSTMDKISASSGKMA 364 EETA+SMEE+T+TV+QN E++ +A L+ A+ TA G A +VV TM I+ SS K+ Sbjct: 304 EETASSMEEITSTVKQNAENSQQASTLAVHASSTAIRGGAVVSQVVDTMGSITESSRKIV 363 Query: 365 DIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVASKEIKDLIG 424 DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA A+KEIK LIG Sbjct: 364 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIG 423 Query: 425 ESMSHVSAGSELVANAGHQMSEIVASVQRFGEIMNNIATATQEQGSGIEQINTAIVQMDQ 484 +S+ V AGS+LV AG M EIV +QR +IM++I A +EQ +GIEQ+N AI QMD+ Sbjct: 424 DSVEKVDAGSKLVEQAGTTMKEIVGGIQRVADIMSDITAAGREQSAGIEQVNQAIAQMDE 483 Query: 485 VTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKI 519 VTQQNAALVEEA+AA+QSL QA+ L ++VSVFK+ Sbjct: 484 VTQQNAALVEEAAAASQSLQDQATHLSEIVSVFKL 518 >gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 538 Score = 327 bits (838), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 194/345 (56%), Positives = 250/345 (72%), Gaps = 3/345 (0%) Query: 178 DEAAVS---ARSTYEWLRTLMLTSIALALLVGIVAAVTIARSILRQLGAEPSEAQSIARE 234 DEA ++ A+ Y +R ++ T + + + + RS+ QLG EP A I R Sbjct: 169 DEAGLAYEAAQQRYLTIRNVIATVLGAGAVAATLLGFLLVRSVYAQLGGEPQYAAQIVRR 228 Query: 235 IASGDLTATVRVRVGDGSSLMASIEQMRYQLNVIAYGIKSAAETISVASGQIAQGNFDLS 294 IA GDL+AT+ R GD +SL+A+++ M+ L I+ A++TI+ ASGQIA GN DLS Sbjct: 229 IAGGDLSATIITRKGDRNSLLAAMQDMQQNLAKTVGDIRRASDTIATASGQIAAGNIDLS 288 Query: 295 QRTEEQAASLEETAASMEELTTTVRQNTEHAAEALRLSGGAAQTATSGSAAFDRVVSTMD 354 RTE+QA+SLEETA+SMEELT TV+QN HA +A +L+ A+ A G+ +VV+TMD Sbjct: 289 ARTEQQASSLEETASSMEELTATVKQNAGHAQQANQLAVSASDIAVQGNTVVAQVVTTMD 348 Query: 355 KISASSGKMADIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAV 414 ISAS+G++ DII VI GIAFQTNILALNAAVEAAR GEQGRGFAVVA+EVRSLAQRSA Sbjct: 349 SISASAGRIGDIIGVINGIAFQTNILALNAAVEAARVGEQGRGFAVVATEVRSLAQRSAE 408 Query: 415 ASKEIKDLIGESMSHVSAGSELVANAGHQMSEIVASVQRFGEIMNNIATATQEQGSGIEQ 474 A+KEIK LI +S+ V AG+ LV AG M+EIVAS+ + +IM I TA++EQ +GIEQ Sbjct: 409 AAKEIKSLIDDSLEKVGAGATLVDQAGSTMNEIVASIGQVTDIMGEITTASREQTAGIEQ 468 Query: 475 INTAIVQMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKI 519 +N AI QMD+VTQQNAALVEEA+AAA SL +QA L++VVSVFK+ Sbjct: 469 VNQAIGQMDRVTQQNAALVEEAAAAAGSLQEQACSLVQVVSVFKL 513 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 321 bits (822), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 239/562 (42%), Positives = 328/562 (58%), Gaps = 45/562 (8%) Query: 4 LKVVTRLALGFGLILVFLLGISALGFYGMSRVNDALTDITRVNNAEIKLASALRNALSQR 63 LK+ RL + FGL+LV + ++ +G R+ D + A IK L+Q+ Sbjct: 6 LKIGVRLGMAFGLLLVLMAFMTVMGVL---RLQDVAKATVLMEEATIK------ERLAQQ 56 Query: 64 AI------AIRNIALLE--DEASMQVEAQTLARQEKLYADAYTALEKMFATEAGTTEREH 115 I +R A + D ++ Q ++ + LE + + G Sbjct: 57 WIKGIETNTVRTFARVRTSDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEG-----K 111 Query: 116 KLLAQVKADENATVPLMAKALQLGLENKPAEAVKVLISEVRPKQQAWITSL-----TELS 170 KLLA V A++ AT + + E + AE + ++++P A+I S+ +++ Sbjct: 112 KLLATV-AEKRATYTAIRDDVMNLREARGAELQNAIANKMKPAADAYIQSVEAVVNAQIN 170 Query: 171 EFEDQLNDEAAVSARSTYEWLRTLMLTSIALALLVGIVAAVTIARSILRQLGAEPSEAQS 230 FED A + Y+ R L++ +AL +GIV A + RSI + L A S Sbjct: 171 NFED-----AKGRVDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPL----DYAVS 221 Query: 231 IAREIASGDLTATVRVRVGDGSS-LMASIEQMRYQLNVIAYGIKSAAETISVASGQIAQG 289 +AR +ASGDLT + V D + L+ +++ M L ++S +TI+ AS QIA G Sbjct: 222 VARLVASGDLTGRITVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASG 281 Query: 290 NFDLSQRTEEQAASLEETAASMEELTTTVRQNTEHAAEALRLSGGAAQTATSGSAAFDRV 349 N DLS RTEEQA+SLEETA+SMEELT+TV+QN ++A +A +L+ A+ A G +V Sbjct: 282 NLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKV 341 Query: 350 VSTMDKISASSGKMADIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA 409 V TMD I+ S+ K+ DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA Sbjct: 342 VDTMDGINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA 401 Query: 410 QRSAVASKEIKDLIGESMSHVSAGSELVANAGHQMSEIVASVQRFGEIMNNIATATQEQG 469 QRSA A+KEIK LI +S+ V GS+LVA AG M E+V SV+R +IM I A+QEQ Sbjct: 402 QRSAAAAKEIKTLIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQS 461 Query: 470 SGIEQINTAIVQMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKI-------RTD 522 +GIEQ+N AI QMDQVTQQNAALVEEA+AAA+SL++QA+ L + VS+FK+ R Sbjct: 462 AGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKLDGVANSSRVA 521 Query: 523 ASTMAAASNNANVGALQGAPMP 544 AASN +P P Sbjct: 522 TRLPVAASNAPATRQFAASPAP 543 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 310 bits (793), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 224/540 (41%), Positives = 324/540 (60%), Gaps = 18/540 (3%) Query: 9 RLALGFGLILVFLLGISALGFYGMSRVNDALTDITRVNNAEIKLASALRNALSQRAIAIR 68 RL L + + L+ A+G G+ N+ L +I VN ++ + A+ + +++ A Sbjct: 10 RLLLTMVFMGMMLIVGGAMGILGVQTTNNTLQNI-YVN--QMPSSEAIHSMMTRLLQARA 66 Query: 69 NIALLEDEASMQVEAQTLARQEKLYADAYTALEKMFATEAGTTEREHKLLAQVKAD---- 124 + L+ + + L R E Y + +K + T E E K+ +V A Sbjct: 67 GLNLVAMRPHEEGSERILKRAENFYLQSEEEWKKYLSLPIETLE-ERKVADEVTAKRIRY 125 Query: 125 -ENATVPLMAKALQLGLENKPAEAVKVLISEVRPKQQAWITSLTELSEFEDQLNDEAAVS 183 + A L+A AL+ G + E +L++++ P Q+ S EL E + + Sbjct: 126 LKEAEQGLIA-ALRAG---RNEEVEDILVNKMPPLFQSLTKSTDELVELQMKSAATGYQD 181 Query: 184 ARSTYEWLRTLMLTSIALALLVGIVAAVTIARSILRQLGAEPSEAQSIAREIASGDLTAT 243 +++ + + R + + + L+G++ A ++R + E IASGDLT+ Sbjct: 182 SQTLFHYFRIIAVVGV----LLGLIGVAIYAFFLIRAITGPLKEMLLHFDTIASGDLTSN 237 Query: 244 VRVRV-GDGSSLMASIEQMRYQLNVIAYGIKSAAETISVASGQIAQGNFDLSQRTEEQAA 302 + V+ + +LM +++M+ +L ++ + IS A+ +IA GN DLS RTE+QAA Sbjct: 238 IEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAA 297 Query: 303 SLEETAASMEELTTTVRQNTEHAAEALRLSGGAAQTATSGSAAFDRVVSTMDKISASSGK 362 SLEETA+SMEELT+TV+QNT++A +A +L+ A+ A G A VV+TMD I+ S+ K Sbjct: 298 SLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARK 357 Query: 363 MADIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVASKEIKDL 422 + DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA A+KEIK L Sbjct: 358 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHL 417 Query: 423 IGESMSHVSAGSELVANAGHQMSEIVASVQRFGEIMNNIATATQEQGSGIEQINTAIVQM 482 I +S++ V AG+ LVA AG M+E+V SV+R +IM+ I A+QEQ +GIEQ+NTAIVQM Sbjct: 418 IDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQM 477 Query: 483 DQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKIRTDASTMAAASNNANVGALQGAP 542 D+VTQQNAALVE+A+AAA SL QA+ L VVSVFK++ S A AL+ P Sbjct: 478 DEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKLQGHQSAPQNLVPQARPKALESRP 537 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 309 bits (792), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 223/523 (42%), Positives = 317/523 (60%), Gaps = 20/523 (3%) Query: 4 LKVVTRLALGFGLILVFLLGISALGFYGMSRVNDALTDITRVNNAEIKLASALRNALSQR 63 LK+ RL L F ++L+ + + +G + + V A R+ A + +++ Sbjct: 6 LKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQA---TVRMEEAAEQERLSIQWHAGNS 62 Query: 64 AIAIRNIALLED---EASMQVEAQTLARQEKLYADAYTALEKMFATEAGTTEREHKLLAQ 120 A AIR A + E Q + + A+ ++ LE + +E G KL++ Sbjct: 63 ANAIRTTARIRSTNQEVQQQFQNEMTAQSVEI-TKLQNKLESLIHSEEG-----KKLMSA 116 Query: 121 VKADENATVPLMAKALQLGLENKPA---EAVKVLISEVRPKQQAWITSLTELSEFEDQLN 177 V + + + +L + PA EA K++ S++ P + + ++ ++ +F+ Sbjct: 117 VGDKRTVYMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYSKTVQDVVDFQQVTF 176 Query: 178 DEAAVSARSTYEWLRTLMLTSIALALLVGIVAAVTIARSILRQLGAEPSEAQSIAREIAS 237 EA + Y R +LT A+AL + + A ++RSI R L A +AR +A Sbjct: 177 LEAKTEVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPL----EYAVEVARTVAG 232 Query: 238 GDLTATVRVRVGDGSS-LMASIEQMRYQLNVIAYGIKSAAETISVASGQIAQGNFDLSQR 296 GDL + V D + L+ ++ M L +++ ETI+ AS QIA GN DLS R Sbjct: 233 GDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSR 292 Query: 297 TEEQAASLEETAASMEELTTTVRQNTEHAAEALRLSGGAAQTATSGSAAFDRVVSTMDKI 356 TEEQA+SLEETA+SMEELT+TV+QN ++A +A +L+ A+ A G +VV TM+ I Sbjct: 293 TEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDI 352 Query: 357 SASSGKMADIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVAS 416 ++S+ K+ DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA A+ Sbjct: 353 NSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAA 412 Query: 417 KEIKDLIGESMSHVSAGSELVANAGHQMSEIVASVQRFGEIMNNIATATQEQGSGIEQIN 476 KEIK LIG+S+ V GS+LVA AG M E+V SV+R +IM+ I A+QEQ +GIEQ+N Sbjct: 413 KEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVN 472 Query: 477 TAIVQMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKI 519 AI QMDQVTQQNAALVEEA+AAA+SL++QA L + VSVFK+ Sbjct: 473 QAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKL 515 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.312 0.124 0.313 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 640,337 Number of extensions: 18814 Number of successful extensions: 154 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 120 Number of HSP's successfully gapped: 14 Length of query: 547 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 461 Effective length of database: 716,977 Effective search space: 330526397 Effective search space used: 330526397 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)