BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0516.p
         (313 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096571|ref|YP_001101646.1| LysR family transcriptional reg...   125   3e-30

>gi|134096571|ref|YP_001101646.1| LysR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 319

 Score =  125 bits (314), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 144/307 (46%), Gaps = 21/307 (6%)

Query: 5   DLNLLIALDALIAQASVAGAARRLGLSASAMSRTLTRLRQATGDPLLVRAGRQMVLTPCA 64
           DLNLL   DA++ + ++  AA  L ++  A+S  L RLR A GD L++R    +  T  A
Sbjct: 7   DLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDALGDELVIRTAHGVKPTSRA 66

Query: 65  EALRERVRNVVHEARSVLRPSVPELDLARLERDFTLRANEGFIEACGAALIDAVTTEAPL 124
             L   VR  + +  + + P     D++R    F +   +         L+ A+  EAP 
Sbjct: 67  TELWPVVRRALSDLETAVTPDT--FDVSRATTTFRMAMADATAALWLPFLVRAIEKEAPG 124

Query: 125 VRLRFAPKVERSPLP-LREGSADLEIGM-----------ANEMGPEVRLQTLFRDRFVGA 172
           + +R  P   R P P L  G  DL IG             N    ++R + L+   +V  
Sbjct: 125 LNVRMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRHERLYTGEYVCV 184

Query: 173 VRIGHPLASLRRVTAERYCACQHVSASPRGDTSSPLDAALAERGLTRKVVAVVPSYPGAL 232
           +R  HPLA    +T + YCA  H+  S  G     +D AL+E G  R+++  V  +  A 
Sbjct: 185 MRKNHPLAK-EELTLDTYCAAHHLLVSFSGRAKGLMDDALSEVGRERRILLTVNQFFTAG 243

Query: 233 AIVRASDLVTIVPSSFLTTAGAPRTDGSASGIHRFELPVVTEPIIVSLMWHPRVELDPAH 292
            +V +SDL+T++P   + + G          +   +LP     + V ++WH R   +PAH
Sbjct: 244 RVVASSDLITVLPRHLIASTGME------EALIAKDLPFSLPEVHVDMLWHERDARNPAH 297

Query: 293 RWLRDKV 299
           +WLR+++
Sbjct: 298 KWLREQL 304


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 548,455
Number of extensions: 22124
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 231
Effective length of database: 730,157
Effective search space: 168666267
Effective search space used: 168666267
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)