BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0514.p
         (627 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094948|ref|YP_001100023.1| hypothetical protein HEAR1742 [...    79   6e-16

>gi|134094948|ref|YP_001100023.1| hypothetical protein HEAR1742
           [Herminiimonas arsenicoxydans]
          Length = 387

 Score = 79.0 bits (193), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 159/375 (42%), Gaps = 33/375 (8%)

Query: 11  RLSSATLLGAAVVLGMLYFGREILAPLAVAGIASLIILPLVRKLDALGLNRAAAAMVSVL 70
           R  S T+L +   +  L    +   PL      +  + PLV  L+ + + R    MV   
Sbjct: 34  RSISLTILASVAFVFALSAAHKFFIPLVFGIFIAYTLNPLVVWLERIRIPR----MV--- 86

Query: 71  LVGGCLVALAVVLTFQLVSVTSDLPQYRDAIQEKVESVRAMTERPFARLEAQLTAVIPQP 130
              G L  +A +L+  L +  +   ++   +     + + +T R    L+   T+ I Q 
Sbjct: 87  ---GTLFVIAAILSSALWTANNLRDEFNSILVSLPTATQKLT-RSLKHLQKDQTSTIQQM 142

Query: 131 MAEPTRNGKKNSRAASAAAAAAATPEADTRMSVRGALRRLFALAWGPIGQAG------IV 184
            A  T   K  ++AA        T       SV    + L+A   G +G A       +V
Sbjct: 143 QAAATEIEKATNQAAGVRPLVKNTA---AEQSVFNLSQWLWA---GSMGAAAFASQVLMV 196

Query: 185 LVLLVFILLEQESLRERLIRLAGLTEMSR--TMQALGDAAEGVSRFFFSQFVVNLVFGLT 242
           + L+ F L+  +  + +L++++G +  SR  T+  L      +  +     V N++FGL 
Sbjct: 197 IFLVFFFLVSGDMFKRKLVKISGRSLSSRKITVNILDAINTSIQHYMLMLLVTNILFGLL 256

Query: 243 MGIVLAAGGVPHAVLWGTLAGVLRFVPYLGAL----ASGLMISVFIAAIDPGWWLALSFL 298
           M I L   G+ +A  W   AG L  +PY G L    A+G+   +            L+  
Sbjct: 257 MWIALRWVGLENAGAWAVAAGFLHIIPYFGPLLIVAATGVTAFMQFETFSS----VLTVA 312

Query: 299 AFYVGLEVIVSNFVEPRIYGHSSGLSPLAVIVSALFWGSLWGPIGLLLSTPLTLCLVVAG 358
              + +  +V  FV   + G  + ++ +AV VS LFW  LWG  G+LL  P+ + + V  
Sbjct: 313 GLTLIIATLVGTFVTTWMTGRIAKMNTVAVFVSLLFWTWLWGVWGMLLGIPIIVIVKVIS 372

Query: 359 RHVAALEPITILLGE 373
            H+   + I  LLGE
Sbjct: 373 EHIEGWQVIAELLGE 387


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,001,303
Number of extensions: 37084
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 540
Effective length of database: 713,682
Effective search space: 385388280
Effective search space used: 385388280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)