BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0513.p (620 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093980|ref|YP_001099055.1| dihydroxy-acid dehydratase [Her... 394 e-111 gi|134094317|ref|YP_001099392.1| phosphogluconate dehydratase [H... 200 1e-52 >gi|134093980|ref|YP_001099055.1| dihydroxy-acid dehydratase [Herminiimonas arsenicoxydans] Length = 557 Score = 394 bits (1013), Expect = e-111, Method: Compositional matrix adjust. Identities = 231/610 (37%), Positives = 351/610 (57%), Gaps = 62/610 (10%) Query: 5 RSHTTTQGRNMAGARALWRATGMKDGDFNKPIIAVVNSFTQFVPGHVHLKDLGQLVAREI 64 RS TQG + + R+++ A G + DF+KP++ + N + P + L+ L + + I Sbjct: 6 RSKNITQGVSRSPNRSMYYAMGYEKADFDKPMVGIANGHSTITPCNSGLQKLADIAIKTI 65 Query: 65 EAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRDLIADSVEYMVNAHCADAMVCISNCDK 124 + AGG + F T + DG++MG +GM YSL SR++IAD +E VN D ++ I CDK Sbjct: 66 KDAGGNPQVFGTPTISDGMSMGTEGMKYSLISREVIADCIETAVNGQWMDGVLVIGGCDK 125 Query: 125 ITPGMLMAAMRLNIPVIFVSGGPMEAGKVIKTVNTDKKIIKLDLVDAMIQAGDQNISDAD 184 PG ++A +R N+P I+V GG ++ G K + + +A+ + +S D Sbjct: 126 NMPGGMIAMLRTNVPSIYVYGGTIKPGHW-----KGKDLTIVSAFEAVGEFTAGRMSQED 180 Query: 185 VAEVERSACPTCGSCSGMFTANSMNCLTEVLGLSLPGNGTIVATHADRKELFLRAGRLIV 244 +ER+ACP+ GSC GM+TAN+M+ E LGL+LP + T+ ++ + R+++ Sbjct: 181 FDGIERNACPSSGSCGGMYTANTMSSSFEALGLALPYSSTMANPDDEKVGSAAESARVLI 240 Query: 245 ELAKRHYEEDDYTILPRNIATKETWENAMTLDVSMGGSTNTVLHLLAAAHEAKVEFTMAD 304 E K+ + PR+I T++ ENA+ + ++ GGSTN VLH LA AH A++++T+ D Sbjct: 241 EAIKKDLK-------PRDIVTRKAIENAVAVIMATGGSTNAVLHFLAIAHAAEIDWTIDD 293 Query: 305 IDRISRKVPCLCKVAPMTNKYHIEDVHRAGGIIAILGELARAGLLDTSRPTVHSKTLGEA 364 +R+ +KVP +C + P + KY D+H+AGGI ++ L AGLL T+ +T+ EA Sbjct: 294 FERMRKKVPVICDLKP-SGKYVATDLHKAGGIPQVMKVLLDAGLLHGDCMTITGQTVAEA 352 Query: 365 IEKYDIRVTSDAEVHKLFRAAPGGVPTQVAFSQQERFADSDLDRANGCIRDREHAYSQDG 424 + VP+ AD D+ I + A G Sbjct: 353 LAHIP------------------SVPS----------ADQDV------IHTIDKALYAQG 378 Query: 425 GLAVLYGNIAEKGCIVKTAGVDESILKFSGTARVFESQDAAVEGILGDQVKAGDVVIVRY 484 LA+L GN++ +GC+ K G+ ++ +G ARVF+ + +A++ I+ +Q+KAGDV+++RY Sbjct: 379 HLAILKGNLSPEGCVAKITGLKNPVI--TGPARVFDDEYSAMDAIMANQIKAGDVLVMRY 436 Query: 485 EGPKGGPGMQEMLYPTSYIKSKGLGKACALFTDGRFSGGSSGLVIGHASPEAAEGGAIGL 544 GPKGGPGM EML PTS + +GLG++ L TDGRFSGG+ G+V+GH SPEA GG IGL Sbjct: 437 LGPKGGPGMPEMLAPTSALVGQGLGESVGLITDGRFSGGTWGMVVGHVSPEAFVGGTIGL 496 Query: 545 VQEGDLIDIDIPNRSINLRVTAEELAQRRAAMEALGDAAWK-PANR-TRVVSQALQAYAA 602 V+EGD + ID I L V+ EE+A+RR A WK PA R TR V L YAA Sbjct: 497 VEEGDSVTIDARQLLIQLNVSEEEIARRR--------ANWKQPAPRYTRGV---LAKYAA 545 Query: 603 LTTSADRGAV 612 L ++A +GAV Sbjct: 546 LASTASKGAV 555 >gi|134094317|ref|YP_001099392.1| phosphogluconate dehydratase [Herminiimonas arsenicoxydans] Length = 637 Score = 200 bits (509), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 162/548 (29%), Positives = 260/548 (47%), Gaps = 48/548 (8%) Query: 33 NKPIIAVVNSFTQFVPGHVHLKDLGQLVAREIEAAGGVAKEFNTI-AVDDGIAMGHDGML 91 P +A+++++ + H + +++ + AAGGVA+ + A+ DGI G GM Sbjct: 66 KNPSVAIISAYNDMLSAHQPYERFPRIIKDAVRAAGGVAQFAGGVPAMCDGITQGQPGME 125 Query: 92 YSLPSRDLIADSVEYMVNAHCADAMVCISNCDKITPGMLMAAMRL-NIPVIFVSGGPMEA 150 SL SRD IA S ++ + DA V + CDKI PG+L+ A+ ++P +F+ GGPM Sbjct: 126 LSLFSRDTIAMSTAIALSHNMFDAAVFLGICDKIVPGLLIGALHFGHLPAVFIPGGPMTT 185 Query: 151 GKVIKTVNTDKKIIKLDLVDAMIQAGDQNISDAD-VAEVERSACPTCGSCSGMFTANSMN 209 G N++K I+ Q Q D + + E E + G+C+ TANS Sbjct: 186 G----MSNSEKSRIR--------QLYAQGKIDREALLEAESKSYHDAGTCTFYGTANSNQ 233 Query: 210 CLTEVLGLSLPGNGTIVATHADRKELFLRAGRLIVELAKRHYEEDDYTILPRNIATKETW 269 L EV+GL LPG+ + R L +RA + VE++ + +T + R + ++T Sbjct: 234 MLMEVMGLHLPGSAFVTPNTPLRDALTVRAAQRAVEISA---QGQTFTPVGR-LVDEKTI 289 Query: 270 ENAMTLDVSMGGSTNTVLHLLAAAHEAKVEFTMADIDRISRKVPCLCKVAPMTNKYHIED 329 NA+ ++ GGSTN +HL+A A A + D D++S VP L ++ P + + Sbjct: 290 VNAIVALLTTGGSTNHTIHLIAIAKAAGIVIDWNDFDQLSAVVPLLTRIYP-NGEADVNH 348 Query: 330 VHRAGGIIAILGELARAGLLDTSRPTVHSKTLGEAIEKYDIRVTSDAEVHKLFRAAPGGV 389 H AGG ++ EL AGLL T+ LGE + + D + +++ AP Sbjct: 349 FHAAGGTGFVIRELLDAGLLHDDVTTI----LGEGLRAHCAEPFLDGD-QAVWKPAP--- 400 Query: 390 PTQVAFSQQERFADSDLDRANGCIRDREHAYSQDGGLAVLYGNIAEKGCIVKTAGVDESI 449 + +R + ++ DGGL +L GN+ ++K + V Sbjct: 401 ---------------HISADESVLRPADRPFAPDGGLRLLTGNLGR--AVIKISAVKPEY 443 Query: 450 LKFSGTARVFESQDAAVEGILGDQVKAGDVVIVRYEGPKGGPGMQEMLYPTSYIKS-KGL 508 + A VF+SQ+ + ++ V +VR++GPK GM E+ T + S + Sbjct: 444 HRVEAPAIVFKSQEEFMHAYQDGKLNQDFVAVVRFQGPKAN-GMPELHALTPALGSLQDA 502 Query: 509 GKACALFTDGRFSGGSSGLVIG-HASPEAAEGGAIGLVQEGDLIDIDIPNRSINLRVTAE 567 G AL TDGR SG S + H SPE GG +G +++GD+I +D + V A Sbjct: 503 GFHVALVTDGRMSGASGKVPAAIHVSPEVLAGGPLGKIRDGDIILLDAEAGILQALVDAA 562 Query: 568 ELAQRRAA 575 E QR A Sbjct: 563 EWQQRPHA 570 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,195,415 Number of extensions: 50587 Number of successful extensions: 171 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 2 Length of query: 620 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 533 Effective length of database: 713,682 Effective search space: 380392506 Effective search space used: 380392506 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)