BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0510.p
         (309 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094815|ref|YP_001099890.1| cobalt-zinc-cadmium resistance ...    65   4e-12
gi|134093788|ref|YP_001098863.1| cation efflux protein CzcD [Her...    64   9e-12

>gi|134094815|ref|YP_001099890.1| cobalt-zinc-cadmium resistance
           protein czcD [Herminiimonas arsenicoxydans]
          Length = 304

 Score = 65.1 bits (157), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 25  RAGRVSTLVSIVVNIGLVLLQVTAGVLSGSQALIADGIHSLSDLISDFVVLLAGHHSRKQ 84
           R  +   L+++ +    ++ +V AG ++GS AL++D  H L+D  +  + L+A    ++ 
Sbjct: 12  RQNQKYLLIALGLTSTFLIAEVVAGFITGSLALLSDAAHMLTDASALAIALVAIQIGKRP 71

Query: 85  ADDDHQYGHQRYENAASLALGALLLAVGLGMLVTAAQKIQHYGHTPPVHVAALWVALVAL 144
           AD    +G+ R+E  A+     LL  V + +L  A Q+ +      P+ + +  + +VA 
Sbjct: 72  ADKRRTFGYLRFEILAAAFNAILLFLVAMYILYEAYQRFRS-----PIEIESTGMLIVAS 126

Query: 145 LAKELLFRYMLRIAQRVRSSMLVANAW-HARSDAASSLVVALG-IVGSLAGFTLLDPVAA 202
           L   +    M  ++    SS+ +  A+    SD   S+ V +G +V    G+T +D V A
Sbjct: 127 LGLVINLISMKLLSAGKDSSLNIKGAYLEVWSDMLGSVGVIIGALVIRFTGWTWVDSVIA 186

Query: 203 AVVGLMVVRTGWGFFWSALHDLMDRAVSAEEAQAIRATILATPGVHGLHDL 253
             +G  V+   W     +++ L++      + + ++ ++L  P V  +HDL
Sbjct: 187 VGIGFWVLPRTWVLLRESINVLLEGVPEGMDLEKLQQSLLEIPSVQSVHDL 237


>gi|134093788|ref|YP_001098863.1| cation efflux protein CzcD
           [Herminiimonas arsenicoxydans]
          Length = 298

 Score = 63.9 bits (154), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 106/225 (47%), Gaps = 9/225 (4%)

Query: 32  LVSIVVNIGLVLLQVTAGVLSGSQALIADGIHSLSDLISDFVVLLAGHHSRKQADDDHQY 91
           L+++ +    ++ +V  G ++GS ALI+D  H  +D  +  + L+A    ++ A+    +
Sbjct: 19  LIALALTSCFLIAEVIGGFITGSLALISDAAHMFTDSAALAIALVAIKVGKRLANKKRTF 78

Query: 92  GHQRYENAASLALGALLLAVGLGMLVTAAQKIQHYGHTPPVHVAALWVALVALLAKELLF 151
           G+ R+E  A+     LL AV + ++  A Q+   + + P +    +    +A L   L+ 
Sbjct: 79  GYYRFEILAAAVNAILLFAVAIYIIFEAYQR---FKNPPEIQSMGMLAIAIAGLCINLIS 135

Query: 152 RYMLRIAQRVRSSMLVA--NAWHARSDAASSLVVALG-IVGSLAGFTLLDPVAAAVVGLM 208
             +L   +    +M  A    W   SD   S+ V +G +V    G++ +D V A  +GL 
Sbjct: 136 MRILSGGKDNSINMKGAYLEVW---SDMLGSIGVIVGALVIGWTGWSWVDSVIAVAIGLW 192

Query: 209 VVRTGWGFFWSALHDLMDRAVSAEEAQAIRATILATPGVHGLHDL 253
           V+   W     +L+ L++      +  AI    LA PGV  +HDL
Sbjct: 193 VLPRTWKLLSDSLNILLEGVPEGTDLTAIEQATLALPGVKSIHDL 237


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 508,585
Number of extensions: 18666
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 2
Length of query: 309
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 228
Effective length of database: 733,452
Effective search space: 167227056
Effective search space used: 167227056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)