BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0501.p (275 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein... 159 1e-40 gi|134095859|ref|YP_001100934.1| hypothetical protein HEAR2691 [... 119 2e-28 gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [... 118 3e-28 gi|134096058|ref|YP_001101133.1| hypothetical protein HEAR2898 [... 118 3e-28 gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [... 118 3e-28 >gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 519 Score = 159 bits (403), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 84/182 (46%), Positives = 118/182 (64%), Gaps = 2/182 (1%) Query: 88 ARSHLEEMEKTLARVGLEDALTGLANRRQFERGLLEEFNRAARTNLSLAIIMIDIDFFDE 147 AR LE LA + L D+LTGLANRR+F+ L +EF RA R SLA+IM+D+D F + Sbjct: 332 ARDDLERSNGELAALALLDSLTGLANRRRFDAALDDEFARAMRNQTSLALIMLDVDHFKK 391 Query: 148 YNATYGRMAGDKVLRRVGSAIRDTNVRPEDLLSRFGAQEIAVLLPGSRLEGALIVAERIR 207 YN YG GD+ L+ + ++ R DL++R+G +E +LLPG+ GA VAER+R Sbjct: 392 YNDRYGHPQGDECLKEISKILKTATARTGDLVARYGGEEFVILLPGTDRAGAAAVAERVR 451 Query: 208 KSIEQLNIEHSASPSGRVTISIGIAAVAPQRQVDEPDTVLRESEQALALAKASGRD--CI 265 +I+ LN+EH+ +P G VT S+GIAA+ PQRQ + P ++ ++QAL AK GR+ CI Sbjct: 452 LAIQALNMEHAETPDGIVTASLGIAALIPQRQQNSPQQLVHAADQALYKAKEDGRNQSCI 511 Query: 266 RT 267 T Sbjct: 512 ST 513 >gi|134095859|ref|YP_001100934.1| hypothetical protein HEAR2691 [Herminiimonas arsenicoxydans] Length = 280 Score = 119 bits (297), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 63/189 (33%), Positives = 105/189 (55%), Gaps = 2/189 (1%) Query: 82 LEQRDDARSHLEEMEKTLARVGLEDALTGLANRRQFERGLLEEFNRAARTNLSLAIIMID 141 + +R + L +++K L + +D LTG+ANRR F+ + E+ A + L++IM+D Sbjct: 93 ISERKKTEAKLIDLQKELETLSFKDGLTGVANRRMFDSIMAAEWANAKLNHQPLSVIMLD 152 Query: 142 IDFFDEYNATYGRMAGDKVLRRVGSAIRDTNVRPEDLLSRFGAQEIAVLLPGSRLEGALI 201 ID+F +YN YG + GD L+RV + + R D +RFG +E ++LP + A+ Sbjct: 153 IDYFKQYNDHYGHIQGDDCLKRVANILSSATRRSRDFFARFGGEEFILVLPETDELNAIN 212 Query: 202 VAERIRKSIEQLNIEHSASPS-GRVTISIGIAAVAPQRQVDEPDTVLRESEQALALAKAS 260 +AER R I + I H S +T+S+G+ V P + D+P + E ++ L AK Sbjct: 213 IAERCRTLICKEKIPHEKSEVIPMITVSLGVGTVIPTDK-DDPIRFIEEVDKRLYQAKQR 271 Query: 261 GRDCIRTTE 269 GR+CI ++ Sbjct: 272 GRNCIANSD 280 >gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [Herminiimonas arsenicoxydans] Length = 313 Score = 118 bits (296), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 68/190 (35%), Positives = 112/190 (58%), Gaps = 2/190 (1%) Query: 81 MLEQR-DDARSHLEEMEKTLARVGLEDALTGLANRRQFERGLLEEFNRAARTNLSLAIIM 139 +LEQR R LE ++ L ++ + D LTG+ +R+ FE L +++ T SL ++ Sbjct: 124 VLEQRLRKERRLLERDKENLEQLVVHDTLTGIYSRKYFEDQLRTRWDQLIDTQESLVMMF 183 Query: 140 IDIDFFDEYNATYGRMAGDKVLRRVGSAIRDTNVRPEDLLSRFGAQEIAVLLPGSRLEGA 199 ID+D+F +N TYG +AGD LR+V S + D+ R + ++RFG +E VL E A Sbjct: 184 IDVDYFKGFNDTYGHIAGDDALRKVASILDDSLRRDSEFVARFGGEEFIVLATEMTAEQA 243 Query: 200 LIVAERIRKSIEQLNIEHSASPSGRVTISIGIAAVAPQRQVDEPDTVLRESEQALALAKA 259 ++ AE + +S+ L+I H+ASP +TIS G+ + P +P+ +L +++ AL AKA Sbjct: 244 IMHAENLCRSVRDLDIPHAASPHQFLTISCGVVRMKPSSMA-QPEVLLEQADSALYQAKA 302 Query: 260 SGRDCIRTTE 269 GR+ + + E Sbjct: 303 RGRNQVASCE 312 >gi|134096058|ref|YP_001101133.1| hypothetical protein HEAR2898 [Herminiimonas arsenicoxydans] Length = 314 Score = 118 bits (296), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 71/171 (41%), Positives = 101/171 (59%), Gaps = 5/171 (2%) Query: 99 LARVGLEDALTGLANRRQFERGLLEEFNRAARTNLSLAIIMIDIDFFDEYNATYGRMAGD 158 L +GL D LTG+ NRR ER LLEE R R +L+ + ID+DFF + N YG GD Sbjct: 141 LQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGHTLSAMYIDLDFFKKVNDNYGHQGGD 200 Query: 159 KVLRRVGSAIRDTNVRPEDLLSRFGAQEIAVLLPGSRLEGALIVAERIRKSIEQLNIEHS 218 +VLR V + I+ +R D L RFG +E VLL + +E AL VAER+R SI + S Sbjct: 201 EVLREVAARIK-AELRLSDALGRFGGEEFVVLLIDAGMEAALAVAERMRSSIANRPLVLS 259 Query: 219 ASPSGRVTISIGIAAVAPQRQVDEPDTV----LRESEQALALAKASGRDCI 265 + R+++SIG++ + + DE T+ L +++QAL LAK GR+ + Sbjct: 260 SGEQLRLSVSIGVSTLQAIERKDEVATIAQQLLAKADQALYLAKQGGRNKV 310 >gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [Herminiimonas arsenicoxydans] Length = 568 Score = 118 bits (295), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 72/190 (37%), Positives = 106/190 (55%), Gaps = 8/190 (4%) Query: 77 QHQQMLEQRDDARS-HLEEMEKTLARVGLEDALTGLANRRQFERGLLEEFNRAARTNLSL 135 Q Q LE + AR+ L+E+ TL ++ DALTGLANR L EEF R R+ + Sbjct: 375 QSNQELEAKVSARTAELQELNITLEQLARTDALTGLANRMHTNERLAEEFARFKRSKIPY 434 Query: 136 AIIMIDIDFFDEYNATYGRMAGDKVLRRVGSAIRDTNVRPEDLLSRFGAQEIAVLLPGSR 195 I+M+D+DFF N YG GD+VL+ V S + T VR D + R G +E +LP + Sbjct: 435 CILMLDVDFFKRVNDIYGHGVGDEVLKHVASILSAT-VRKTDFVGRHGGEEFLSILPMTD 493 Query: 196 LEGALIVAERIRKSIEQLNIEHSASPSGRVTISIGIAAVAPQRQVDEPDTVLRESEQALA 255 A++VAE+IR +IE I P G +T+SIG+ V ++E D + +++ + Sbjct: 494 SSAAMVVAEKIRNTIESTPI----GPVGNLTVSIGVQEVTVN-DINE-DVAVTRADECMY 547 Query: 256 LAKASGRDCI 265 AK SGR+ + Sbjct: 548 QAKKSGRNKV 557 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.133 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 364,474 Number of extensions: 13616 Number of successful extensions: 113 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 86 Number of HSP's successfully gapped: 29 Length of query: 275 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 195 Effective length of database: 736,747 Effective search space: 143665665 Effective search space used: 143665665 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)