BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0497.p (550 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093719|ref|YP_001098794.1| aerotaxis sensor receptor, sens... 568 e-163 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 308 5e-85 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 294 6e-81 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 294 7e-81 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 291 7e-80 >gi|134093719|ref|YP_001098794.1| aerotaxis sensor receptor, senses cellular redox state or proton motive force [Herminiimonas arsenicoxydans] Length = 553 Score = 568 bits (1465), Expect = e-163, Method: Compositional matrix adjust. Identities = 299/525 (56%), Positives = 395/525 (75%), Gaps = 5/525 (0%) Query: 1 MRTNLPITTIERLLEDGKSIVSKTDLQGNITYVNPYFVEISGFEEVELIGAPQNIVRHPE 60 MRTNLP+T E +L D S+VSKTD +G I+YVNP F+E SGF E EL+G P N++RHP+ Sbjct: 1 MRTNLPVTNAEFILRDEMSLVSKTDTKGRISYVNPAFIEASGFTEEELLGKPHNLIRHPD 60 Query: 61 MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR 120 MP +AF DMW TL++GLPW G+VKNR KNGD+YWV ANVTPVRE + V YMSVR++PSR Sbjct: 61 MPEQAFGDMWQTLQQGLPWTGMVKNRRKNGDFYWVNANVTPVREEQKIVAYMSVRSKPSR 120 Query: 121 EQVQAAENAYRRFVAGQARGLRIHRGAVASTGIMGWLQGLRDLSMAKRLAWMMSILTLLV 180 EQV A Y RF AG A+GL I RG V ++G+ G L L+++ + R+ MS L L+ Sbjct: 121 EQVDATAKIYARFKAGTAKGLMIKRGEVVASGLFGKLASLKNIGLGARIGISMSALIALI 180 Query: 181 ITGGLAAGSAVQSAGGSPYAIWLG--TLAGTLLLLGSWAILHASIVAPLQRAIKAVHGLA 238 +T G AA +AV++A ++ W G T+ G ++++ +WA L+ SI+ PL R I +A Sbjct: 181 MTLGFAAATAVENA---AWSYWYGAATIVGAVIVILTWAGLYFSIMRPLDRLISKTRVIA 237 Query: 239 GGDLDLHIDTTAHGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIASGNMDLSS 298 GGD + D H DMG L QALQQ+NVNLR+++GD+R+NV+S+TI+T EIA GNMDLS Sbjct: 238 GGDFTANFDVDRHDDMGQLQQALQQMNVNLRSVMGDIRQNVDSITIATHEIAEGNMDLSR 297 Query: 299 RTESQASALEETASSVEQFAATVRQNADSASNADRQAQTASAIAQRGSASVQRMGKTMDE 358 RTE+QAS+LEETASS++QFA+TV+QNAD+A A+R +AS +A +G A V+++G TM+E Sbjct: 298 RTEAQASSLEETASSMQQFASTVKQNADNAQQANRLVLSASEVAGKGGAVVEKVGATMNE 357 Query: 359 IDAASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAA 418 I A++ +IVDII LIDGI+FQTNILALNAAVEAARAGEQG+GFAVVA EVR+LAQRSA A Sbjct: 358 ISASAKRIVDIISLIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRSLAQRSANA 417 Query: 419 AKDIKSLIDDSRAKVESGNLLVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQL 478 A++IK LIDDS KV GN LV + M + +V+++ M EIT AS EQS GIEQ+ Sbjct: 418 AREIKHLIDDSVDKVGVGNRLVGDAMATMEGIVNSVKSVTDIMNEITQASREQSDGIEQV 477 Query: 479 NQAVNAIDETTQQNAALVEQAAAAAENLRDQSIKLSQAVSVFRIT 523 N A++ +D+ TQQNAALVE+AAAAA +L++Q+ LSQ++S+F+ T Sbjct: 478 NLAISHMDQVTQQNAALVEEAAAAAASLKEQTEHLSQSISIFKTT 522 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 308 bits (789), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 188/347 (54%), Positives = 252/347 (72%), Gaps = 7/347 (2%) Query: 201 IWLGTLAGTLLLLGSWAILHASIVAPLQRAIKAVHGLAGGDLDLHIDTTAHGDMGLLLQA 260 I LG +A TL ++ +W +L SI PL A+ +A GDL I + + G LLQA Sbjct: 191 IVLGLVALTLGIVLAW-MLTRSITKPLDYAVSVARLVASGDLTGRITVDSKDETGQLLQA 249 Query: 261 LQQLNVNLRAIIGDVRRNVESMTISTGEIASGNMDLSSRTESQASALEETASSVEQFAAT 320 L+ +N +L A I VR V+++ ++ +IASGN+DLSSRTE QAS+LEETASS+E+ +T Sbjct: 250 LKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSLEETASSMEELTST 309 Query: 321 VRQNADSASNADRQAQTASAIAQRGSASVQRMGKTMDEIDAASHKIVDIIGLIDGISFQT 380 V+QNAD+A A++ A TAS +A++G V ++ TMD I+ ++ KIVDIIG+IDGI+FQT Sbjct: 310 VKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIVDIIGVIDGIAFQT 369 Query: 381 NILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKDIKSLIDDSRAKVESGNLLV 440 NILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAK+IK+LIDDS KV++G+ LV Sbjct: 370 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDSVDKVDTGSKLV 429 Query: 441 RETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQLNQAVNAIDETTQQNAALVEQAA 500 E M E+ +V+ + MAEI AS EQS GIEQ+NQA+ +D+ TQQNAALVE+AA Sbjct: 430 AEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAA 489 Query: 501 AAAENLRDQSIKLSQAVSVFRI------TYVSAGPTTTAASAPALRR 541 AAAE+L +Q+ L+QAVS+F++ + V+ A++APA R+ Sbjct: 490 AAAESLNEQAANLAQAVSIFKLDGVANSSRVATRLPVAASNAPATRQ 536 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 294 bits (753), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 175/319 (54%), Positives = 238/319 (74%), Gaps = 7/319 (2%) Query: 222 SIVAPLQRAIKAVHGLAGGDLDLHIDTTAHGDMGLLLQALQQLNVNLRAIIGDVRRNVES 281 SI PL+ A++ +AGGDL I+ + + G LLQAL+ +N L + +VR +E+ Sbjct: 215 SITRPLEYAVEVARTVAGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIET 274 Query: 282 MTISTGEIASGNMDLSSRTESQASALEETASSVEQFAATVRQNADSASNADRQAQTASAI 341 + ++ +IA+GN+DLSSRTE QAS+LEETASS+E+ +TV+QNAD+A A++ A +AS + Sbjct: 275 IATASNQIAAGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGV 334 Query: 342 AQRGSASVQRMGKTMDEIDAASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGF 401 A++G V ++ TM++I++++ KIVDIIG+IDGI+FQTNILALNAAVEAARAGEQGRGF Sbjct: 335 AEKGGVVVSQVVDTMEDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGF 394 Query: 402 AVVASEVRTLAQRSAAAAKDIKSLIDDSRAKVESGNLLVRETAQAMGELGGAVENMAVTM 461 AVVASEVR LAQRSAAAAK+IK+LI DS KV+ G+ LV E M E+ +V+ + M Sbjct: 395 AVVASEVRNLAQRSAAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIM 454 Query: 462 AEITVASNEQSGGIEQLNQAVNAIDETTQQNAALVEQAAAAAENLRDQSIKLSQAVSVFR 521 +EI AS EQS GIEQ+NQA+ +D+ TQQNAALVE+AAAAAE+L +Q+ KL++AVSVF+ Sbjct: 455 SEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFK 514 Query: 522 ITYVSAGPTTTAASAPALR 540 + V AAS PA + Sbjct: 515 LDGV-------AASTPATK 526 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 294 bits (753), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 190/353 (53%), Positives = 244/353 (69%), Gaps = 26/353 (7%) Query: 196 GSPYAIWLGTLAGTLLLLGSWAILHASIVAPLQRAIKAVHGLAGGDLDLHIDTTAHGDM- 254 G+ AI LGTL L +G I PL A+K +A GDL TA DM Sbjct: 195 GAVIAILLGTLIAWRLTVG--------ITRPLHEALKVAESVAEGDL------TARSDMA 240 Query: 255 ------GLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIASGNMDLSSRTESQASALE 308 GLLL AL ++ NL + +R +++ ++ EIASGN+DLSSRTE QAS+LE Sbjct: 241 ETQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQASSLE 300 Query: 309 ETASSVEQFAATVRQNADSASNADRQAQTASAIAQRGSASVQRMGKTMDEIDAASHKIVD 368 ETASS+E+ +TV+QNAD++ A++ A AS +A +G A V ++ TM I+ ++ KIVD Sbjct: 301 ETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKIVD 360 Query: 369 IIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKDIKSLIDD 428 IIG+IDGI+FQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSAAAAK+IK+LI D Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIGD 420 Query: 429 SRAKVESGNLLVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQLNQAVNAIDET 488 S KV++G+ LV E M E+ V+ +A MAEIT AS EQS GIEQ+NQAV+ +D+ Sbjct: 421 SVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMDQV 480 Query: 489 TQQNAALVEQAAAAAENLRDQSIKLSQAVSVFRI-----TYVSAGPTTTAASA 536 TQQNAALVE+AAAAAE+L+DQ+ L++AVSVFR+ T SA P T ++A Sbjct: 481 TQQNAALVEEAAAAAESLQDQARNLAEAVSVFRVGSGYATAQSAAPRTVQSTA 533 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 291 bits (744), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 182/344 (52%), Positives = 251/344 (72%), Gaps = 4/344 (1%) Query: 201 IWLGTLAGTLLLLGSWAILHASIVA-PLQRAIKAVHGLAGGDLDLHIDTTAHGDMGLLLQ 259 I +G + +LL G A ++A PL A++ +A GDL I + + G LLQ Sbjct: 190 ISIGAIIFGVLLAGFMAFWLIRLIARPLHDAVQIARSVAAGDLTQQIHVNSTNETGQLLQ 249 Query: 260 ALQQLNVNLRAIIGDVRRNVESMTISTGEIASGNMDLSSRTESQASALEETASSVEQFAA 319 AL+ +N +L + VRR E++T+++GEIASGN DLSSRTE+QA +LEETASS+E+ + Sbjct: 250 ALKDMNDSLSKTVSAVRRGTETITVASGEIASGNADLSSRTEAQAGSLEETASSMEELTS 309 Query: 320 TVRQNADSASNADRQAQTASAIAQRGSASVQRMGKTMDEIDAASHKIVDIIGLIDGISFQ 379 TVRQNAD+A A++ +A+ +A +G + V + TM I +S KIVDIIG+ID I+FQ Sbjct: 310 TVRQNADNARQANQLVVSATEVAVKGGSVVSEVVITMGSIKDSSRKIVDIIGVIDSIAFQ 369 Query: 380 TNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKDIKSLIDDSRAKVESGNLL 439 TNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AAK+IK+LIDDS KV++G+ L Sbjct: 370 TNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEIKALIDDSVHKVDAGSKL 429 Query: 440 VRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQLNQAVNAIDETTQQNAALVEQA 499 V + M E+ +V+++A M+EIT AS EQS GIEQ+NQA++ +DE TQQNAALVEQA Sbjct: 430 VDQAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQVNQAISQMDEMTQQNAALVEQA 489 Query: 500 AAAAENLRDQSIKLSQAVSVFRITYVSAGPTTTAAS---APALR 540 AAAA++++DQ+++LS AV++F++ + +T+A++ APAL+ Sbjct: 490 AAAAQSMQDQAVELSGAVAIFKLDAGGSAMSTSASTRRAAPALQ 533 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.128 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 781,947 Number of extensions: 27075 Number of successful extensions: 169 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 142 Number of HSP's successfully gapped: 15 Length of query: 550 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 464 Effective length of database: 716,977 Effective search space: 332677328 Effective search space used: 332677328 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)