BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0495.p (433 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095984|ref|YP_001101059.1| transcription regulator GntR [H... 67 2e-12 gi|134094028|ref|YP_001099103.1| bifunctional transcriptional re... 67 2e-12 gi|134094032|ref|YP_001099107.1| putative aminotransferase [Herm... 64 1e-11 >gi|134095984|ref|YP_001101059.1| transcription regulator GntR [Herminiimonas arsenicoxydans] Length = 470 Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 117/462 (25%), Positives = 186/462 (40%), Gaps = 74/462 (16%) Query: 1 MKIQGKTAADIFECVRALVQTQRLQAGQALPPVRELAEQLGLNRNTVAAAYRRLATAGIA 60 MK+ AADI ++ V L+ G LP VR+ + ++ +TV AY L G+ Sbjct: 1 MKLYETLAADIALSIQEGV----LRLGDRLPSVRQASASRDVSPSTVFQAYYLLEARGLI 56 Query: 61 ITQGR-----LGTVIRAPAAPGEEEGSQGDTALTDLAD-------------------GNP 96 + R +G V + P P + D++ D+++ P Sbjct: 57 RARERSGYYVVGDVRKLPPEPEQASQPDEDSSPVDISELVFEVLESSKMRDVVPLGSAFP 116 Query: 97 NPAWLPDLAQTWRSIAYQ-PRLYGAPTVN---AGLAQFMMQ----------WCRPDCPPE 142 +P P LA+ +++A +L TV+ G Q Q +PD Sbjct: 117 SPLLFP-LARLAKAMASSVQQLDPWSTVDDLTPGNPQLRRQIALRYRADGLHVQPD---- 171 Query: 143 FELDLTHGAVDAIERLLAAHLRHGDKVAVEDPCFLASINLLRSSGWQSVGVGMD-EQGML 201 E+ +T+GA+DA+ L A R GD V VE P F A++ L +G Q++ V +GM Sbjct: 172 -EIVITNGALDALNLCLIAVTRPGDAVLVESPTFYAALQSLERNGLQAIEVPTHPREGMD 230 Query: 202 PEALQAALNRG-VQALILTPRAHNPTGASLSRRRARALSAILEKHPHVLVIVDDHFALLS 260 AL L R +A L NP G+ + + R L A+L +H + +I DD + L Sbjct: 231 LAALARVLERHQPKACWLMTNFQNPLGSLMPDEKKRDLVALLSQH-DIPLIEDDVYGELY 289 Query: 261 GQPYHSVIPRQASRWALV---RSFSKALGPDVRVAAVASDAATSRLLRTRLSAGSNWVSH 317 + LV SFSK L P RV A T + R +L+ + Sbjct: 290 FGDKRPAPAKAYDTKGLVMHCSSFSKCLAPGYRVGWAAPGRYTRAVARHKLTTTLAASAP 349 Query: 318 FLQDAIEFIITQPETAGL---MQRARSAYGLCRQHLESALAAQ----DIACWSQGDGLNL 370 ++ E G +++ R L + A+A A +G G L Sbjct: 350 AQAALATYL----EKGGYDRHLRQLRHTLALQQTQFMEAIARYFPPGTQATRPRG-GYFL 404 Query: 371 WLPLPLSIDDQAVALAMARQ----GWLVRPGSVFAVQQAVSG 408 W+ LP +++ AL + RQ G + PG +F+ Q + Sbjct: 405 WVELPHAVN----ALTLHRQALSHGISIAPGPIFSAHQGFTN 442 >gi|134094028|ref|YP_001099103.1| bifunctional transcriptional regulator/amino transferase [Herminiimonas arsenicoxydans] Length = 486 Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 102/451 (22%), Positives = 182/451 (40%), Gaps = 48/451 (10%) Query: 5 GKTAADIFECVRALVQTQRLQAGQALPPVRELAEQLGLNRNTVAAAYRRLATAGIAITQG 64 G A I + V A + + L+ G +P +R+ ++Q ++R TV AY RL G+ ++ Sbjct: 29 GSLIAQIVQLVTARIDDKLLRTGARMPSIRQFSDQHKVSRFTVVEAYDRLVAGGLLESRR 88 Query: 65 RLGTVIR------APAAPGEEEGSQGDTALTDLAD--------GNPNPAWLPD------- 103 G +R AP A Q + + + P LP+ Sbjct: 89 GSGFYVRDRTPMLAPRAQRTNTARQPVDVVWLVRNMFRQLPPQKMPGVGLLPNEWLDADL 148 Query: 104 LAQTWRSIAYQ--PRLYGAPTVNAGL---AQFMMQWCRPDCPPEFELDLTHGAVDAIERL 158 +A R+++ Q P YG P L Q + P+ + T G A++ + Sbjct: 149 VANALRAVSRQNLPLQYGNPQGFLPLRQQLQLKLAELEISATPD-QFVTTLGVTQALDLV 207 Query: 159 LAAHLRHGDKVAVEDPCFLASINLLRSSGWQSVGVGMDEQGMLPEALQ----AALNRGVQ 214 +++ GD + V+DP + G + VG+ G P+ Q AAL+R + Sbjct: 208 ARHYIQPGDTIFVDDPAWFLMFGSFAMLGAKVVGIPRLPDG--PDIAQLAELAALHRP-K 264 Query: 215 ALILTPRAHNPTGASLSRRRARALSAILEKHPHVLVIVDDHFALLSGQPYHSVIP----- 269 ++ HNPT SLS +A + I E++ +++ DD + + P +V P Sbjct: 265 LFVINSVLHNPTSTSLSAAKAFQVLKIAEQY-DFMIVEDDIYCDM--HPGTTVQPATRIA 321 Query: 270 --RQASRWALVRSFSKALGPDVRVAAVASDAATSRLLRTRLSAGSNWVSHFLQDAIEFII 327 Q +R + FSK L ++RV +A+ ++ L R + + + + I+ Sbjct: 322 ALDQLNRVIYLGGFSKTLAANLRVGFIATSPEIAKHLCDRKMLTTLTTTEITERVVYRIL 381 Query: 328 TQPETAGLMQRARSAYGLCRQHLESALAAQDIAC-WSQGDGLNLWLPLPLSIDDQAVALA 386 ++ R R+ R + I S G+ +W + D A+ Sbjct: 382 SEGHYRKHADRLRNKLDAVRDKTVRQMERIGIKINISTPAGMFVW--TDVGCDSNALTER 439 Query: 387 MARQGWLVRPGSVFAVQQAVS-GLRITVSTL 416 QG+L+ PGS+F+ Q S +R V+ + Sbjct: 440 AMEQGYLLAPGSLFSPNQLPSTNMRFNVAAM 470 >gi|134094032|ref|YP_001099107.1| putative aminotransferase [Herminiimonas arsenicoxydans] Length = 397 Score = 63.9 bits (154), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/276 (25%), Positives = 115/276 (41%), Gaps = 8/276 (2%) Query: 147 LTHGAVDAIERLLAAHLRHGDKVAVEDPCFLASINLLRSSGWQSVGVGMDEQGMLPEALQ 206 + G+ A++ L + KV VE P +L ++ + V + D+ G+LPE + Sbjct: 104 MVSGSQQALDLLGKVLIEEHSKVLVETPSYLGALQAFSVYQPEFVSIPTDDFGLLPEEV- 162 Query: 207 AALNRGVQALILTPRAHNPTGASLSRRRARALSAILEKHPHVLVIVDDHFALLS--GQPY 264 A + G + L P NPTG ++S R AL + + +I DD + LS G+P Sbjct: 163 AKIADGARLLYALPNFQNPTGRTMSVERRFALVETCARL-GLPLIEDDPYGALSYRGEPL 221 Query: 265 HSVIPRQASRWALVRSFSKALGPDVRVAAVASDAATSRLLRTRLSAGSNWVSHFLQDAIE 324 ++ + + SFSK L P +R+ V + R L A S Q + Sbjct: 222 PKMLTMNPNGVIYLGSFSKVLTPGIRLGYVVAPVPLVRKLEQAKQAADLHTSQLTQMVVY 281 Query: 325 FIITQPETAGLMQRARSAYGLCRQHLESALAAQDIA--CWSQGD-GLNLWLPLPLSIDDQ 381 I + R+ Y Q + AL A W++ + G+ +W+ LP ID Sbjct: 282 EAIKDGFLEKHIPSIRTLYANQCQVMLDALTEFFPAGVTWNKPEGGMFIWVTLPEHIDCM 341 Query: 382 AVALAMARQGWLVRPGSVF-AVQQAVSGLRITVSTL 416 + Q PG+ F A + + LR++ T+ Sbjct: 342 KLLEESITQNVAFVPGAPFYANEPQKNTLRLSFVTV 377 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.133 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 799,474 Number of extensions: 31876 Number of successful extensions: 114 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 111 Number of HSP's successfully gapped: 3 Length of query: 433 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 349 Effective length of database: 723,567 Effective search space: 252524883 Effective search space used: 252524883 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)